Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_G19
(206 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0892 - 8778097-8778236,8778390-8778486,8778568-8778747,877... 29 0.39
02_05_0706 + 31082924-31083010,31084208-31084576,31084645-31089033 28 1.2
07_01_0068 - 495582-497981 27 2.1
07_01_0040 + 325737-328181 27 2.1
05_02_0002 - 5476472-5476485,5486918-5488655 27 2.1
07_03_1680 + 28620244-28620480,28620556-28620732,28620819-286209... 25 6.3
05_04_0282 - 19790596-19790761,19791001-19791132,19791267-197917... 25 6.3
01_01_1098 - 8691312-8692430,8692640-8693509,8694522-8696105,869... 25 6.3
12_02_0617 + 21256745-21256943,21257454-21257647,21257836-212580... 25 8.4
11_06_0707 + 26467214-26470309 25 8.4
07_03_1780 - 29465873-29466130,29466236-29466335,29466473-294665... 25 8.4
07_03_0337 + 16918613-16919078,16921610-16921725,16922039-169222... 25 8.4
03_03_0129 - 14684003-14684123,14684205-14684323,14684406-146845... 25 8.4
>08_01_0892 - 8778097-8778236,8778390-8778486,8778568-8778747,
8779138-8779247,8781153-8781294,8782298-8782686,
8782752-8782834,8783524-8785244,8785894-8786040,
8786121-8786264,8786669-8786741,8787413-8787633
Length = 1148
Score = 29.5 bits (63), Expect = 0.39
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -1
Query: 128 HACLSGSYPLFCLLRLLDGICTRHPSNRPLHT 33
H C SG +F L+ + G TRH + RPL T
Sbjct: 1100 HECGSGE--IFMLISFIQGFMTRHSTARPLGT 1129
Score = 25.4 bits (53), Expect = 6.3
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -1
Query: 137 ISVHACLSGSYPLFCLLRLLDGICTRHPSNRPL 39
I VHA GS +F L+ + G RH + RPL
Sbjct: 261 ILVHA--PGSGEIFMLISFIQGFMARHFTARPL 291
>02_05_0706 + 31082924-31083010,31084208-31084576,31084645-31089033
Length = 1614
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +2
Query: 77 PAVEEDKTTDSFQTSTHER*CSSKYYDVACSSRTPYREGPFA 202
PAV+E+K++ S Q+ + + CSS++ SS+ R A
Sbjct: 500 PAVKEEKSSSSSQSLNNSQSCSSEHAKTIGSSKEDARSSTAA 541
>07_01_0068 - 495582-497981
Length = 799
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -2
Query: 142 GTLAFMRACLEAIRCFVFFDCWTASVHDTRRIVLCI 35
G L + C EA R F + W + D RR++L +
Sbjct: 659 GLLRYRDTCAEARRFFKSAEAWDPNHDDARRMLLSV 694
>07_01_0040 + 325737-328181
Length = 814
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -2
Query: 142 GTLAFMRACLEAIRCFVFFDCWTASVHDTRRIVLCI 35
G L + C EA R F + W + D RR++L +
Sbjct: 676 GLLRYRDTCAEARRFFKSAEAWDPNHDDARRMLLSV 711
>05_02_0002 - 5476472-5476485,5486918-5488655
Length = 583
Score = 27.1 bits (57), Expect = 2.1
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -1
Query: 206 NTQRGPLYTVC--VKNKRRHNISRNISVHACLSGSYPLF 96
N QRG + C KN++ +++SR I H SG P +
Sbjct: 29 NRQRGFICCPCNKCKNQKEYSVSRTIHFHLFESGFMPSY 67
>07_03_1680 +
28620244-28620480,28620556-28620732,28620819-28620984,
28621099-28621493
Length = 324
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +3
Query: 18 AIANASMQRTIRRVSCTDAVQQSKKTKQRIASRQARMNANVPR 146
++A+A + T SC +A+ K + +ARM A++ R
Sbjct: 21 SVASAQLSATFYDTSCPNALSTIKSVITAAVNSEARMGASLLR 63
>05_04_0282 -
19790596-19790761,19791001-19791132,19791267-19791704,
19791800-19791900,19792335-19792435,19792781-19792884,
19793112-19793206,19793306-19793584
Length = 471
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -1
Query: 137 ISVHACLSGSYPLFCLLRLLDGICTRHPSNRPL 39
I+V + + G +P+ LR+L RHP N PL
Sbjct: 336 ITVPSSVLGIHPML-FLRVLQMCMWRHPQNAPL 367
>01_01_1098 -
8691312-8692430,8692640-8693509,8694522-8696105,
8696199-8696258,8696336-8696414,8696494-8696555,
8697129-8697204,8697367-8697419,8698181-8698270,
8698411-8698458
Length = 1346
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -3
Query: 84 TAGRHLYTTPVESSSAYWHSLSLALVP 4
T+G + P + S+A+WH LA+ P
Sbjct: 477 TSGAAAGSEPSDISAAFWHPTDLAVKP 503
>12_02_0617 +
21256745-21256943,21257454-21257647,21257836-21258042,
21258115-21258232,21258325-21258401,21258513-21258692,
21259312-21259356,21260309-21260413,21261115-21261261
Length = 423
Score = 25.0 bits (52), Expect = 8.4
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Frame = +3
Query: 15 QAIANASMQRTIRRVSCTDAVQQS---KKTKQRIASRQARMNANVPRNIMTSLVLHAHRI 185
QA+ A RT V+ AV + K ++ + + N NVP I + + L HR
Sbjct: 35 QALLRARPLRTSAAVAAAAAVVEVGGVKIAREDVVKEEDPTN-NVPDTIYSKIGLQLHRR 93
Query: 186 ERAPLRI 206
+ PL I
Sbjct: 94 DNHPLGI 100
>11_06_0707 + 26467214-26470309
Length = 1031
Score = 25.0 bits (52), Expect = 8.4
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -2
Query: 94 VFFDCWTASVHDTRRIVLCILA 29
++FD W+ +HD R + C L+
Sbjct: 481 LYFDHWSCKMHDLLRQLACYLS 502
>07_03_1780 -
29465873-29466130,29466236-29466335,29466473-29466559,
29466682-29467000,29467097-29468567
Length = 744
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +3
Query: 24 ANASMQRTIRRVSCTDAVQQSKKTKQRIASRQARMNANVPRN 149
+N + +R +C A K K++ + +QAR+ PRN
Sbjct: 229 SNNNNKRPAPPAACKTATSSKKNKKKKASLQQARVLRPQPRN 270
>07_03_0337 +
16918613-16919078,16921610-16921725,16922039-16922208,
16922509-16922602,16923371-16923457,16923529-16923609,
16923800-16923925,16924541-16924649,16924723-16924802,
16925401-16925529,16925605-16925705,16926075-16926208,
16926307-16926404,16926488-16926607,16927008-16927022,
16927930-16927957,16928066-16928118,16928446-16928517,
16928605-16928652,16928928-16929033,16929110-16929168,
16929792-16929887,16929942-16929959
Length = 801
Score = 25.0 bits (52), Expect = 8.4
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +2
Query: 20 DSECQYAEDDSTGVVYRCRPAVEEDKTTDSFQTSTHER*CSSKYYDVACSS 172
DSE E STG R R A+EE K + HE+ + ++ C S
Sbjct: 345 DSEIAEIEAASTGEAARIRAAMEELKGELAHLKDQHEK--ERQNWETTCES 393
>03_03_0129 -
14684003-14684123,14684205-14684323,14684406-14684501,
14684605-14684712,14684974-14685060,14685135-14685338,
14685429-14685488,14686096-14686264,14686400-14686473,
14686586-14686897,14687054-14687212
Length = 502
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 63 TTPVESSSAYWHSLSLALV 7
TTPV ++SAYW + S L+
Sbjct: 136 TTPVVNTSAYWFNNSQELI 154
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,868,929
Number of Sequences: 37544
Number of extensions: 100210
Number of successful extensions: 319
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 14,793,348
effective HSP length: 48
effective length of database: 12,991,236
effective search space used: 259824720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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