Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_G19
(206 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22188| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.33
SB_20480| Best HMM Match : RVT_1 (HMM E-Value=0.00014) 29 0.44
SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.77
SB_1675| Best HMM Match : ig (HMM E-Value=5.6e-05) 28 1.3
SB_18516| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.4
SB_41002| Best HMM Match : NCD3G (HMM E-Value=4.8) 27 3.1
SB_3158| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.1
SB_9628| Best HMM Match : SOCS_box (HMM E-Value=6.3e-11) 26 4.1
SB_7016| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.1
SB_2435| Best HMM Match : WD40 (HMM E-Value=4.1e-10) 26 4.1
SB_11360| Best HMM Match : PDZ (HMM E-Value=0) 26 5.4
SB_25695| Best HMM Match : PDEase_I (HMM E-Value=3.1e-36) 25 7.2
SB_19190| Best HMM Match : Peptidase_A17 (HMM E-Value=0) 25 7.2
SB_13878| Best HMM Match : Vicilin_N (HMM E-Value=0.2) 25 7.2
SB_51817| Best HMM Match : Avirulence (HMM E-Value=1.2) 25 9.5
SB_51159| Best HMM Match : DUF1140 (HMM E-Value=2.3) 25 9.5
SB_33371| Best HMM Match : SRF-TF (HMM E-Value=2.4e-24) 25 9.5
SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43) 25 9.5
>SB_22188| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1046
Score = 29.9 bits (64), Expect = 0.33
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 9 RGQAIANASMQRTIRRVSCTDAVQQSKKTKQRIAS 113
R +AN S+ R+ VS T AV+ S KTK+ ++S
Sbjct: 734 RSLVLANGSIPRSASEVSSTLAVKASDKTKRSLSS 768
>SB_20480| Best HMM Match : RVT_1 (HMM E-Value=0.00014)
Length = 332
Score = 29.5 bits (63), Expect = 0.44
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +2
Query: 29 CQYAEDDSTGVVYRCRPAVEEDKTTDSFQTSTHE 130
CQ+ ++ + + +P +DK +DSF T + E
Sbjct: 105 CQFGREEQLKLAMKTKPRCSQDKGSDSFDTVSRE 138
>SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4475
Score = 28.7 bits (61), Expect = 0.77
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = -1
Query: 155 HNISRNISVHACLSGSYPLFCLLRLLDGICTRHPSNRPLHTGIR 24
++ S N +A +Y + + +L+DGI R +NR +H G++
Sbjct: 3865 NDASINFGFNALSGAAYTVSGVNKLIDGISHRRGNNRYIHQGLQ 3908
>SB_1675| Best HMM Match : ig (HMM E-Value=5.6e-05)
Length = 964
Score = 27.9 bits (59), Expect = 1.3
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 7/34 (20%)
Frame = -1
Query: 95 CLLR--LLDGICTR-----HPSNRPLHTGIRYRL 15
CLL LL +CTR HP++RP++ + YRL
Sbjct: 659 CLLPFILLTALCTRLFITVHPAHRPMYAPVYYRL 692
>SB_18516| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 292
Score = 27.1 bits (57), Expect = 2.4
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1
Query: 56 PSNRPLHTGIRYRLPSCR 3
PSNRP +TG+ + PS R
Sbjct: 13 PSNRPSNTGLAFAFPSIR 30
>SB_41002| Best HMM Match : NCD3G (HMM E-Value=4.8)
Length = 116
Score = 26.6 bits (56), Expect = 3.1
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -1
Query: 68 CTRHPSNRPLHTGIRYRLPSCR 3
C + +P +G YR+PSCR
Sbjct: 84 CAEYHRRKPAKSGNDYRIPSCR 105
>SB_3158| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 153
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = +3
Query: 42 RTIRRVSCTDAVQQSKKTKQRIA---SRQARMNAN 137
R RR+ CT +Q+ KK K +A +R + N N
Sbjct: 73 RYFRRICCTTLLQEKKKKKMPLAWVRTRPEKQNGN 107
>SB_9628| Best HMM Match : SOCS_box (HMM E-Value=6.3e-11)
Length = 148
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +3
Query: 42 RTIRRVSCTDAVQQSKKTKQRIASRQARMNAN 137
R RR+ CT +Q+ K+ R +R N N
Sbjct: 19 RYFRRICCTTLLQEKKRPLARDRTRPKEQNGN 50
>SB_7016| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 472
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/61 (21%), Positives = 25/61 (40%)
Frame = -1
Query: 206 NTQRGPLYTVCVKNKRRHNISRNISVHACLSGSYPLFCLLRLLDGICTRHPSNRPLHTGI 27
+T+ P C++ ++ R ++H S F L + D +C S R + +
Sbjct: 344 STEVSPFINYCIEATKKQKTPRGTALHLLCSVGRDSFELSKHFDKVCAVDHSGRLVDAAL 403
Query: 26 R 24
R
Sbjct: 404 R 404
>SB_2435| Best HMM Match : WD40 (HMM E-Value=4.1e-10)
Length = 1272
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -3
Query: 84 TAGRHLYTTPVESSSAYWHSLSLALVPK 1
T G + TP++S+S+Y+ + + L PK
Sbjct: 998 TGGGQFWGTPIKSASSYYRASTGVLFPK 1025
>SB_11360| Best HMM Match : PDZ (HMM E-Value=0)
Length = 625
Score = 25.8 bits (54), Expect = 5.4
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +3
Query: 12 GQAIANASMQRTIRRVSCTDAVQQSKKTKQRIASRQARMNA 134
G I + ++Q + VS DAVQ K TK+R+ +R+ A
Sbjct: 65 GDKIISVNLQN-LEDVSHEDAVQVLKATKERVTIVVSRLTA 104
>SB_25695| Best HMM Match : PDEase_I (HMM E-Value=3.1e-36)
Length = 646
Score = 25.4 bits (53), Expect = 7.2
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +3
Query: 6 ARGQAIANA-SMQRTIRRVSCTDAVQQSKKTKQRIASRQARMNANVPRNIMTSLVLHAHR 182
ARG A SM R AV+ S + + + R +VP N+ + +HA
Sbjct: 409 ARGPGAARRKSMVRRHTFRGVVHAVKASLYVNKMLKNATERYKMHVPENVQKAFEIHAMT 468
Query: 183 IER 191
++R
Sbjct: 469 LDR 471
>SB_19190| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
Length = 1829
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 74 RPAVEEDKTTDSFQTSTHER*CSSKYYDVACSSRTP 181
RP +E K +S Q + HE S + V S++ P
Sbjct: 1648 RPTKDEAKQVNSIQATEHEENQDSGFQGVTTSNKFP 1683
>SB_13878| Best HMM Match : Vicilin_N (HMM E-Value=0.2)
Length = 611
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -2
Query: 127 MRACLEA-IRCFVFFDCWTASVHDTRRIVLCIL 32
MRA + +RCF FF C+ V +R C L
Sbjct: 416 MRAQVHTFLRCFPFFSCFRTLVEMRKRFKSCKL 448
>SB_51817| Best HMM Match : Avirulence (HMM E-Value=1.2)
Length = 643
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +3
Query: 63 CTDAVQQSKKTKQRIASRQARMNANVP 143
C D +QQ+ +T Q + +RQ + + P
Sbjct: 91 CADIIQQTVRTVQTLPNRQCALYRHYP 117
>SB_51159| Best HMM Match : DUF1140 (HMM E-Value=2.3)
Length = 444
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 32 QYAEDDSTGVVYRCRPAVEEDKTTDSFQTSTHE 130
Q+ D T V RCR ++ + +SF S+ E
Sbjct: 398 QFLADTITRAVKRCRSPTFDESSDESFDESSDE 430
>SB_33371| Best HMM Match : SRF-TF (HMM E-Value=2.4e-24)
Length = 333
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -2
Query: 52 RIVLCILAFAIACP 11
R+ LC LAFA+ CP
Sbjct: 218 RLHLCALAFALVCP 231
>SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43)
Length = 1806
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 33 SMQRTIRRVSCTDAVQQSKKTKQRIASRQARMNANVPR 146
+++RT+R+ + Q KTKQ SR+A+ A +
Sbjct: 1503 TVKRTLRKRTSEPTKQYEPKTKQTRTSRRAKSPAGAEK 1540
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,978,923
Number of Sequences: 59808
Number of extensions: 122229
Number of successful extensions: 348
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 16,821,457
effective HSP length: 47
effective length of database: 14,010,481
effective search space used: 294220101
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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