Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_G19
         (206 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC032526-1|AAH32526.1|  712|Homo sapiens mitogen-activated prote...    31   0.51 
AY437560-1|AAR06179.1|  712|Homo sapiens TAK1-binding protein 3 ...    31   0.51 
AY371491-1|AAQ88279.1|  712|Homo sapiens TAK1 binding protein 3 ...    31   0.51 
AY331592-1|AAQ92939.1|  684|Homo sapiens NFkB activating protein...    31   0.51 
AY331591-1|AAQ92938.1|  712|Homo sapiens NFkB activating protein...    31   0.51 

>BC032526-1|AAH32526.1|  712|Homo sapiens mitogen-activated protein
           kinase kinase kinase 7 interacting protein 3 protein.
          Length = 712

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
 Frame = +3

Query: 36  MQRTIRRVSCTDAVQQSKK-TKQRIASRQARMNAN 137
           MQR +RRVSCT A+   ++ T+ R  +RQ ++N +
Sbjct: 555 MQRRLRRVSCTTAIPTPEEMTRLRSMNRQLQINVD 589


>AY437560-1|AAR06179.1|  712|Homo sapiens TAK1-binding protein 3
           protein.
          Length = 712

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
 Frame = +3

Query: 36  MQRTIRRVSCTDAVQQSKK-TKQRIASRQARMNAN 137
           MQR +RRVSCT A+   ++ T+ R  +RQ ++N +
Sbjct: 555 MQRRLRRVSCTTAIPTPEEMTRLRSMNRQLQINVD 589


>AY371491-1|AAQ88279.1|  712|Homo sapiens TAK1 binding protein 3
           protein.
          Length = 712

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
 Frame = +3

Query: 36  MQRTIRRVSCTDAVQQSKK-TKQRIASRQARMNAN 137
           MQR +RRVSCT A+   ++ T+ R  +RQ ++N +
Sbjct: 555 MQRRLRRVSCTTAIPTPEEMTRLRSMNRQLQINVD 589


>AY331592-1|AAQ92939.1|  684|Homo sapiens NFkB activating protein 1
           isoform B protein.
          Length = 684

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
 Frame = +3

Query: 36  MQRTIRRVSCTDAVQQSKK-TKQRIASRQARMNAN 137
           MQR +RRVSCT A+   ++ T+ R  +RQ ++N +
Sbjct: 555 MQRRLRRVSCTTAIPTPEEMTRLRSMNRQLQINVD 589


>AY331591-1|AAQ92938.1|  712|Homo sapiens NFkB activating protein 1
           isoform A protein.
          Length = 712

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
 Frame = +3

Query: 36  MQRTIRRVSCTDAVQQSKK-TKQRIASRQARMNAN 137
           MQR +RRVSCT A+   ++ T+ R  +RQ ++N +
Sbjct: 555 MQRRLRRVSCTTAIPTPEEMTRLRSMNRQLQINVD 589


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,019,568
Number of Sequences: 237096
Number of extensions: 478952
Number of successful extensions: 1007
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 76,859,062
effective HSP length: 47
effective length of database: 65,715,550
effective search space used: 1380026550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)