Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_G19
(206 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr... 27 1.8
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 27 1.8
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p... 27 1.8
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 27 1.8
U00048-3|AAB53827.3| 315|Caenorhabditis elegans Nematode astaci... 27 1.8
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 27 1.8
U29377-2|AAA68713.4| 627|Caenorhabditis elegans Hypothetical pr... 26 3.2
U29377-1|AAZ94294.1| 773|Caenorhabditis elegans Hypothetical pr... 26 3.2
Z83230-10|CAL22704.2| 714|Caenorhabditis elegans Hypothetical p... 26 4.2
Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical pr... 26 4.2
AL021481-9|CAA16332.3| 714|Caenorhabditis elegans Hypothetical ... 26 4.2
Z81508-9|CAB04140.2| 310|Caenorhabditis elegans Hypothetical pr... 25 5.6
AL110498-6|CAL69744.1| 109|Caenorhabditis elegans Hypothetical ... 25 5.6
Z81536-4|CAB04364.1| 310|Caenorhabditis elegans Hypothetical pr... 25 7.4
Z49068-5|CAA88863.2| 707|Caenorhabditis elegans Hypothetical pr... 25 7.4
U97550-4|AAK18978.2| 773|Caenorhabditis elegans Hypothetical pr... 25 7.4
L14710-6|AAA28079.1| 227|Caenorhabditis elegans Hypothetical pr... 25 7.4
Z69635-5|CAA93458.1| 350|Caenorhabditis elegans Hypothetical pr... 25 9.7
U64858-3|AAN84865.1| 1250|Caenorhabditis elegans Roller: helical... 25 9.7
U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helical... 25 9.7
AC024881-7|AAK71417.1| 310|Caenorhabditis elegans Serpentine re... 25 9.7
>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical protein
K08E5.3b protein.
Length = 3183
Score = 27.1 bits (57), Expect = 1.8
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -1
Query: 197 RGPLYTV-CVKNKRRHNISRNISVHACLSGSYPLFCLLRLLD 75
RG +YT C +N++RH I+ + CL+G + R +D
Sbjct: 1002 RGNIYTCQCGRNEKRHPITDICLKNECLTGEHDCDRSARCID 1043
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical protein
K08E5.3a protein.
Length = 3767
Score = 27.1 bits (57), Expect = 1.8
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -1
Query: 197 RGPLYTV-CVKNKRRHNISRNISVHACLSGSYPLFCLLRLLD 75
RG +YT C +N++RH I+ + CL+G + R +D
Sbjct: 1586 RGNIYTCQCGRNEKRHPITDICLKNECLTGEHDCDRSARCID 1627
>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 27.1 bits (57), Expect = 1.8
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -1
Query: 197 RGPLYTV-CVKNKRRHNISRNISVHACLSGSYPLFCLLRLLD 75
RG +YT C +N++RH I+ + CL+G + R +D
Sbjct: 1002 RGNIYTCQCGRNEKRHPITDICLKNECLTGEHDCDRSARCID 1043
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 27.1 bits (57), Expect = 1.8
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -1
Query: 197 RGPLYTV-CVKNKRRHNISRNISVHACLSGSYPLFCLLRLLD 75
RG +YT C +N++RH I+ + CL+G + R +D
Sbjct: 1586 RGNIYTCQCGRNEKRHPITDICLKNECLTGEHDCDRSARCID 1627
>U00048-3|AAB53827.3| 315|Caenorhabditis elegans Nematode astacin
protease protein 4 protein.
Length = 315
Score = 27.1 bits (57), Expect = 1.8
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -2
Query: 100 CFVFFDCWTASVHDTRRIV 44
C +F CWTASV + ++++
Sbjct: 12 CAIFATCWTASVVNNKQVI 30
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane cell
adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 27.1 bits (57), Expect = 1.8
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -1
Query: 197 RGPLYTV-CVKNKRRHNISRNISVHACLSGSYPLFCLLRLLD 75
RG +YT C +N++RH I+ + CL+G + R +D
Sbjct: 1586 RGNIYTCQCGRNEKRHPITDICLKNECLTGEHDCDRSARCID 1627
>U29377-2|AAA68713.4| 627|Caenorhabditis elegans Hypothetical
protein K05F1.6b protein.
Length = 627
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 149 ISRNISVHACLSGSYPLFCLLRLLDGIC 66
+S + V + YP+F L+RLL IC
Sbjct: 164 LSSMLGVFLPFNDYYPMFLLIRLLSAIC 191
>U29377-1|AAZ94294.1| 773|Caenorhabditis elegans Hypothetical
protein K05F1.6a protein.
Length = 773
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 149 ISRNISVHACLSGSYPLFCLLRLLDGIC 66
+S + V + YP+F L+RLL IC
Sbjct: 310 LSSMLGVFLPFNDYYPMFLLIRLLSAIC 337
>Z83230-10|CAL22704.2| 714|Caenorhabditis elegans Hypothetical
protein Y43F4B.3 protein.
Length = 714
Score = 25.8 bits (54), Expect = 4.2
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 42 RTIRRVSCTDAVQQSKKTKQRIASRQARMN 131
R RR+S TDA QS +T I R+ R+N
Sbjct: 80 RQRRRISATDAT-QSSRTMNVIEDRKPRVN 108
>Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical
protein C05C9.3 protein.
Length = 1225
Score = 25.8 bits (54), Expect = 4.2
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +2
Query: 83 VEEDKTTDSFQTSTHER*CSSKYYDVACSSRTPYRE 190
++EDKT Q++ E C + +C+S ++E
Sbjct: 341 IQEDKTNTKRQSAEDEEECDLNVWAFSCNSTIEHKE 376
>AL021481-9|CAA16332.3| 714|Caenorhabditis elegans Hypothetical
protein Y43F4B.3 protein.
Length = 714
Score = 25.8 bits (54), Expect = 4.2
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 42 RTIRRVSCTDAVQQSKKTKQRIASRQARMN 131
R RR+S TDA QS +T I R+ R+N
Sbjct: 80 RQRRRISATDAT-QSSRTMNVIEDRKPRVN 108
>Z81508-9|CAB04140.2| 310|Caenorhabditis elegans Hypothetical
protein F20E11.2 protein.
Length = 310
Score = 25.4 bits (53), Expect = 5.6
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -2
Query: 154 IIFRGTLAFMRACLEAIRCFVFFDCWTASVHDTRRIVLCILAF 26
++F G C AI +VFF C+ A + + L I+ F
Sbjct: 68 LLFTGIRLKRNVCFPAISIYVFFICFQAVIILMLVVDLLIIVF 110
>AL110498-6|CAL69744.1| 109|Caenorhabditis elegans Hypothetical
protein Y64G10A.11 protein.
Length = 109
Score = 25.4 bits (53), Expect = 5.6
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +1
Query: 19 R*RMPVCRGRFDGCRVQMPSS 81
R R P C G+F C V+ P +
Sbjct: 31 RSRKPGCNGKFQSCAVRQPKT 51
>Z81536-4|CAB04364.1| 310|Caenorhabditis elegans Hypothetical
protein F40D4.5 protein.
Length = 310
Score = 25.0 bits (52), Expect = 7.4
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -2
Query: 154 IIFRGTLAFMRACLEAIRCFVFFDCWTASVHDTRRIVLCILAF 26
++F G C AI +VFF C+ A + I L I+ F
Sbjct: 68 LLFTGIRLKRNVCFPAISIYVFFICFQAVMILMLVIDLLIIVF 110
>Z49068-5|CAA88863.2| 707|Caenorhabditis elegans Hypothetical
protein K01C8.5 protein.
Length = 707
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 95 KTTDSFQTSTHER*CSSKYYDVACSSRTPY 184
K S HE+ SS++ +V+ SS++PY
Sbjct: 306 KEKSSSDEEVHEKSTSSRHSNVSRSSKSPY 335
>U97550-4|AAK18978.2| 773|Caenorhabditis elegans Hypothetical
protein T20F7.1 protein.
Length = 773
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = -1
Query: 92 LLRLLDGICTRHPSNRPLHTGIRYRLPSCR 3
+L+L D I ++ NRP++ ++ +L CR
Sbjct: 552 MLQLADFISSKGIKNRPVYPVVKAKLARCR 581
>L14710-6|AAA28079.1| 227|Caenorhabditis elegans Hypothetical
protein K02D10.4 protein.
Length = 227
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 148 FRGTLAFMRA-CLEAIRCFVFFDCWTASVHDTR 53
+ GT + M++ C E+ F +F W A++ D+R
Sbjct: 4 YHGTHSIMQSKCFES---FAYFQIWLANIEDSR 33
>Z69635-5|CAA93458.1| 350|Caenorhabditis elegans Hypothetical
protein F19B6.3 protein.
Length = 350
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/33 (27%), Positives = 20/33 (60%)
Frame = +3
Query: 48 IRRVSCTDAVQQSKKTKQRIASRQARMNANVPR 146
++R+ C + K++ +R+AS+ ++A PR
Sbjct: 211 LQRLKCNHIFELDKQSNKRVASQPMDIDAKRPR 243
>U64858-3|AAN84865.1| 1250|Caenorhabditis elegans Roller: helically
twisted, animalsroll when moving protein 3, isoform b
protein.
Length = 1250
Score = 24.6 bits (51), Expect = 9.7
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = +2
Query: 44 DDSTGVVYRCR-PAVEEDKTTDSFQTSTHER*CSSKYYDVACSSRTPYREGPF 199
DDS +V + + P V ++ T + H KY D P+++G F
Sbjct: 746 DDSVKIVEKLQYPHVLDNTTKTVYLAGDHSMGIFKKYLDDTAGLPKPFKDGLF 798
>U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helically
twisted, animalsroll when moving protein 3, isoform a
protein.
Length = 2456
Score = 24.6 bits (51), Expect = 9.7
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = +2
Query: 44 DDSTGVVYRCR-PAVEEDKTTDSFQTSTHER*CSSKYYDVACSSRTPYREGPF 199
DDS +V + + P V ++ T + H KY D P+++G F
Sbjct: 746 DDSVKIVEKLQYPHVLDNTTKTVYLAGDHSMGIFKKYLDDTAGLPKPFKDGLF 798
>AC024881-7|AAK71417.1| 310|Caenorhabditis elegans Serpentine
receptor, class sx protein3 protein.
Length = 310
Score = 24.6 bits (51), Expect = 9.7
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -2
Query: 157 VIIFRGTLAFMRACLEAIRCFVFFDCWTASVHDTRRIVLCILAF 26
V++F G C AI ++FF C A + + L I+ F
Sbjct: 68 VLLFTGIQLRRNICFPAISLYIFFICAQAVIMLMLVVDLFIIVF 111
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,923,327
Number of Sequences: 27780
Number of extensions: 87582
Number of successful extensions: 231
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 12,740,198
effective HSP length: 48
effective length of database: 11,406,758
effective search space used: 228135160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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