Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_G18
         (185 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    29   0.11 
SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        24   2.3  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    23   5.3  
SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po...    23   7.0  
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   7.0  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    23   7.0  
SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces po...    22   9.3  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    22   9.3  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    22   9.3  

>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 28.7 bits (61), Expect = 0.11
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 39   ALFIVCFRLVCIVYILYLFFYVLCS 113
            A+F V F LV ++YIL LF  ++ S
Sbjct: 1190 AMFFVLFNLVSMIYILTLFIAIIIS 1214


>SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 76

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 39  ALFIVCFRLVCIVYILYLFFYVLC 110
           A+F+VC+ L C+V  + +   + C
Sbjct: 25  AIFLVCYPLYCVVCFVSVLCRLYC 48


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 42  LFIVCFRLVCIVYILYLFFYVLC 110
           +FIV F    I++ L+ FF  +C
Sbjct: 142 IFIVYFSSFPILHFLFFFFLCVC 164


>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 30  GKVALFIVCFRLVCIVYILYLF 95
           G +A+  +C  +  IV I+YLF
Sbjct: 295 GDIAVANICMLVFSIVTIIYLF 316


>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +3

Query: 48  IVCFRLVCIVYILY 89
           I+CFR +C++ + Y
Sbjct: 102 ILCFRRICLLCVFY 115


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +3

Query: 24  FIGKVALFIVCFRLVCIVY 80
           F G   ++++ FRL+C+ Y
Sbjct: 846 FFGNATMYVL-FRLICVCY 863


>SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 460

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 27  IGKVALFIVCFRLVCIVYILYLF 95
           +G   LF+    LVC+  I Y+F
Sbjct: 423 LGISILFVFFIILVCLAVIFYVF 445


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -1

Query: 128  LNFLNTT*YVKKQIQNVNYTYKS 60
            LNF+++T Y+K    + N+ +K+
Sbjct: 1201 LNFISSTLYLKVSFCSSNFLFKT 1223


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +3

Query: 45  FIVCFRLVCIVYILYLFFYVLCSI 116
           FIVCF    I +     F+  C +
Sbjct: 467 FIVCFESETIAFAFKYKFFAFCGV 490


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 645,852
Number of Sequences: 5004
Number of extensions: 8751
Number of successful extensions: 24
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 2,362,478
effective HSP length: 42
effective length of database: 2,152,310
effective search space used: 40893890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)