Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_G18
         (185 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0428 + 17842370-17842633,17842835-17842971,17843609-17844314     27   2.8  
01_04_0124 + 16359695-16359734,16360217-16360453,16361133-163621...    27   2.8  

>10_08_0428 + 17842370-17842633,17842835-17842971,17843609-17844314
          Length = 368

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +2

Query: 2   HEGTEVIIYRKSRIVY 49
           HEGTE+ +YRK + V+
Sbjct: 181 HEGTEMAVYRKGKSVF 196


>01_04_0124 +
           16359695-16359734,16360217-16360453,16361133-16362104,
           16362211-16362398,16362564-16363942,16364024-16365047,
           16365171-16365566,16367484-16367999,16368085-16368226,
           16369409-16369553,16371351-16371432,16371851-16371895,
           16372018-16372140
          Length = 1762

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 51  VCFRLVCIVYILYLFFYVLC 110
           V FRL+ +VY+  LF Y LC
Sbjct: 936 VIFRLLSMVYLGALFLYALC 955


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,524,902
Number of Sequences: 37544
Number of extensions: 39463
Number of successful extensions: 82
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 14,793,348
effective HSP length: 41
effective length of database: 13,254,044
effective search space used: 265080880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)