Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_G18
         (185 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72502-8|CAD44097.1|  374|Caenorhabditis elegans Hypothetical pr...    30   0.19 
Z49909-17|CAD60413.1|  303|Caenorhabditis elegans Hypothetical p...    27   1.3  
Z77656-2|CAE17769.1|  724|Caenorhabditis elegans Hypothetical pr...    27   1.8  
AF043697-2|AAB97556.1|  820|Caenorhabditis elegans Patched relat...    27   1.8  
Z83125-7|CAB05619.1|  407|Caenorhabditis elegans Hypothetical pr...    26   3.1  
Z66520-8|CAE17837.1|  357|Caenorhabditis elegans Hypothetical pr...    26   4.1  
AF039047-2|ABR92603.1|  403|Caenorhabditis elegans Serpentine re...    25   5.4  
AF039047-1|AAB94224.2|  403|Caenorhabditis elegans Serpentine re...    25   5.4  
Z81575-5|CAB04631.2|  353|Caenorhabditis elegans Hypothetical pr...    25   7.1  
Z81567-1|CAB04586.1|  240|Caenorhabditis elegans Hypothetical pr...    25   7.1  
Z81064-5|CAB02964.2| 1392|Caenorhabditis elegans Hypothetical pr...    25   7.1  
Z32682-8|CAE17888.1|  189|Caenorhabditis elegans Hypothetical pr...    25   7.1  
AF125970-1|AAD14763.1|  357|Caenorhabditis elegans Hypothetical ...    25   7.1  
Z93379-5|CAB07593.3|  351|Caenorhabditis elegans Hypothetical pr...    25   9.4  
Z74033-6|CAF31474.1|  321|Caenorhabditis elegans Hypothetical pr...    25   9.4  

>Z72502-8|CAD44097.1|  374|Caenorhabditis elegans Hypothetical
           protein C08B6.11 protein.
          Length = 374

 Score = 30.3 bits (65), Expect = 0.19
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 42  LFIVCFRLVCIVYILYLFFYVL 107
           +F + F L+CI   LY +FYV+
Sbjct: 345 IFFIAFPLICIFITLYFYFYVM 366


>Z49909-17|CAD60413.1|  303|Caenorhabditis elegans Hypothetical
           protein C14A4.15 protein.
          Length = 303

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +3

Query: 60  RLVCIVYILYLFFYVLCSI 116
           ++ CI+YI + FF +LC++
Sbjct: 170 KVTCIIYIFFCFFSLLCNM 188


>Z77656-2|CAE17769.1|  724|Caenorhabditis elegans Hypothetical
           protein F07B10.4 protein.
          Length = 724

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 45  FIVCFRLVCIVYILYLFFYVLCSI 116
           F+V   + C   +L+ F +VLCSI
Sbjct: 206 FVVMMIVACSTTVLFAFVFVLCSI 229


>AF043697-2|AAB97556.1|  820|Caenorhabditis elegans Patched related
           family protein 11 protein.
          Length = 820

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 27  IGKVALFIVCFRLVCIVYI 83
           IG +A+ +VC  +VC V+I
Sbjct: 641 IGSIAVTVVCMAIVCFVFI 659


>Z83125-7|CAB05619.1|  407|Caenorhabditis elegans Hypothetical
           protein T15D6.9 protein.
          Length = 407

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 7/15 (46%), Positives = 14/15 (93%)
 Frame = +3

Query: 57  FRLVCIVYILYLFFY 101
           F++ C+V+I++LFF+
Sbjct: 9   FKICCLVFIIFLFFF 23


>Z66520-8|CAE17837.1|  357|Caenorhabditis elegans Hypothetical
           protein F49E12.12 protein.
          Length = 357

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 36  VALFIVCFRLVCIVYILYLFFY 101
           +ALF  C  +VC  YI +L+ Y
Sbjct: 247 IALFAFCLPVVCKDYISFLYTY 268


>AF039047-2|ABR92603.1|  403|Caenorhabditis elegans Serpentine
           receptor, class r protein4, isoform b protein.
          Length = 403

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -1

Query: 137 LFELNFLNTT*YVKKQIQNVNYTYKSKTNYKQCDFSYK 24
           LF+ + +  T Y  K++Q  +   K K      DFSY+
Sbjct: 208 LFQFSMVRETEYFNKELQKASEDKKLKDPTVIADFSYR 245


>AF039047-1|AAB94224.2|  403|Caenorhabditis elegans Serpentine
           receptor, class r protein4, isoform a protein.
          Length = 403

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -1

Query: 137 LFELNFLNTT*YVKKQIQNVNYTYKSKTNYKQCDFSYK 24
           LF+ + +  T Y  K++Q  +   K K      DFSY+
Sbjct: 208 LFQFSMVRETEYFNKELQKASEDKKLKDPTVIADFSYR 245


>Z81575-5|CAB04631.2|  353|Caenorhabditis elegans Hypothetical
           protein R08H2.5 protein.
          Length = 353

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 57  FRLVCIVYILYLF 95
           F +VC+VY +YLF
Sbjct: 228 FHMVCLVYCIYLF 240


>Z81567-1|CAB04586.1|  240|Caenorhabditis elegans Hypothetical
           protein K08C9.1 protein.
          Length = 240

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 104 YVKKQIQNVNYTYKSKTNYKQCDFSY 27
           YV +  + V  TYK+ +NY++C  +Y
Sbjct: 163 YVVRYGERVLMTYKAGSNYRKCIGTY 188


>Z81064-5|CAB02964.2| 1392|Caenorhabditis elegans Hypothetical
           protein F16B12.6 protein.
          Length = 1392

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
 Frame = -1

Query: 86  QNVNYTYKSKTNYKQCDFS----YKL*PLFPR 3
           QN  +  K  TNYK C F     Y + P  PR
Sbjct: 848 QNSTFLLKENTNYKTCPFHLVYLYSINPKEPR 879


>Z32682-8|CAE17888.1|  189|Caenorhabditis elegans Hypothetical
           protein M04D8.8 protein.
          Length = 189

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 9   EQRL*FIGKVALFIVCFRLVCIVYILYLFF 98
           EQ    + KVALFI  F +  I +++ +++
Sbjct: 40  EQHYKILAKVALFITYFSIAGIAFLIPMYY 69


>AF125970-1|AAD14763.1|  357|Caenorhabditis elegans Hypothetical
           protein Y60C6A.1 protein.
          Length = 357

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 42  LFIVCFRLVCIVYILYLFFYVLCSI 116
           +F V F L C   I+Y  F +LC I
Sbjct: 242 VFTVFFYLKCTEIIIYYHFNMLCKI 266


>Z93379-5|CAB07593.3|  351|Caenorhabditis elegans Hypothetical
           protein F21H7.7 protein.
          Length = 351

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 24  FIGKVALFIVCFRLVCIVYILYL 92
           FIG   +F   F + C++Y LY+
Sbjct: 219 FIGAHIVFNNSFHIFCLIYYLYI 241


>Z74033-6|CAF31474.1|  321|Caenorhabditis elegans Hypothetical
          protein F38B7.8 protein.
          Length = 321

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 27 IGKVALFIVCFRLVCIVYILYLFF 98
          +G + L I  F +VC   ILY+FF
Sbjct: 17 VGCLLLVIGTFGIVCNSLILYIFF 40


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,463,931
Number of Sequences: 27780
Number of extensions: 46654
Number of successful extensions: 172
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 12,740,198
effective HSP length: 42
effective length of database: 11,573,438
effective search space used: 219895322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)