Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_G18
         (185 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    27   0.021
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    22   0.58 
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    20   3.1  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    20   3.1  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    20   3.1  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    20   3.1  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    20   3.1  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    20   3.1  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    20   3.1  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    19   4.1  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    19   4.1  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    19   4.1  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    19   4.1  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    19   5.4  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    18   9.5  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    18   9.5  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    18   9.5  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    18   9.5  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    18   9.5  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    18   9.5  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    18   9.5  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    18   9.5  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    18   9.5  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 27.1 bits (57), Expect = 0.021
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 128 LNFLNTT*YVKKQIQNVNYTYKSKTN 51
           LN++NT  +VK Q Q  N  Y+ K N
Sbjct: 273 LNYVNTEQFVKSQYQANNVHYQGKEN 298


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 0.58
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 83  NVNYTYKSKTNYKQCDFSYKL 21
           N  Y Y +K NY   +++ KL
Sbjct: 95  NYKYNYNNKYNYNNNNYNKKL 115


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 83  NVNYTYKSKTNYKQ 42
           N NY+  +  NYKQ
Sbjct: 88  NYNYSNYNNNNYKQ 101


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 83  NVNYTYKSKTNYKQ 42
           N NY+  +  NYKQ
Sbjct: 88  NYNYSNYNNNNYKQ 101


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 83  NVNYTYKSKTNYKQ 42
           N NY+  +  NYKQ
Sbjct: 88  NYNYSNYNNNNYKQ 101


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 83  NVNYTYKSKTNYKQ 42
           N NY+  +  NYKQ
Sbjct: 88  NYNYSNYNNNNYKQ 101


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 83  NVNYTYKSKTNYKQ 42
           N NY+  +  NYKQ
Sbjct: 88  NYNYSNYNNNNYKQ 101


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 83  NVNYTYKSKTNYKQ 42
           N NY+  +  NYKQ
Sbjct: 88  NYNYSNYNNNNYKQ 101


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 8/25 (32%), Positives = 10/25 (40%)
 Frame = -1

Query: 116 NTT*YVKKQIQNVNYTYKSKTNYKQ 42
           N   Y      N NY   +  NYK+
Sbjct: 92  NNNNYNNNNYNNYNYNNNNYNNYKK 116


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 169 RLRRSYRFRHDFLN 128
           RLR S R +++FLN
Sbjct: 121 RLRYSNRSQYEFLN 134


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 169 RLRRSYRFRHDFLN 128
           RLR S R +++FLN
Sbjct: 121 RLRYSNRSQYEFLN 134


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 169 RLRRSYRFRHDFLN 128
           RLR S R +++FLN
Sbjct: 172 RLRYSNRSQYEFLN 185


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 169 RLRRSYRFRHDFLN 128
           RLR S R +++FLN
Sbjct: 121 RLRYSNRSQYEFLN 134


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
          receptor 1 protein.
          Length = 953

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -2

Query: 58 KQTINNATFPINY 20
          +QT+N   F +NY
Sbjct: 50 EQTLNELNFNLNY 62


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 6/15 (40%), Positives = 8/15 (53%)
 Frame = -1

Query: 77  NYTYKSKTNYKQCDF 33
           NY     TNYK+  +
Sbjct: 96  NYNNNYNTNYKKLQY 110


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 6/15 (40%), Positives = 8/15 (53%)
 Frame = -1

Query: 77  NYTYKSKTNYKQCDF 33
           NY     TNYK+  +
Sbjct: 96  NYNNNYNTNYKKLQY 110


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 6/15 (40%), Positives = 8/15 (53%)
 Frame = -1

Query: 77  NYTYKSKTNYKQCDF 33
           NY     TNYK+  +
Sbjct: 96  NYNNNYNTNYKKLQY 110


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 6/15 (40%), Positives = 8/15 (53%)
 Frame = -1

Query: 77  NYTYKSKTNYKQCDF 33
           NY     TNYK+  +
Sbjct: 96  NYNNNYNTNYKKLQY 110


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 6/15 (40%), Positives = 8/15 (53%)
 Frame = -1

Query: 77  NYTYKSKTNYKQCDF 33
           NY     TNYK+  +
Sbjct: 96  NYNNNYNTNYKKLQY 110


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 6/15 (40%), Positives = 8/15 (53%)
 Frame = -1

Query: 77  NYTYKSKTNYKQCDF 33
           NY     TNYK+  +
Sbjct: 96  NYNNNYNTNYKKLQY 110


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 6/15 (40%), Positives = 8/15 (53%)
 Frame = -1

Query: 77  NYTYKSKTNYKQCDF 33
           NY     TNYK+  +
Sbjct: 100 NYNNNYNTNYKKLQY 114


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 6/15 (40%), Positives = 8/15 (53%)
 Frame = -1

Query: 77  NYTYKSKTNYKQCDF 33
           NY     TNYK+  +
Sbjct: 96  NYNNNYNTNYKKLQY 110


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 51  VCFRLVCIVYILYLFFYVLCS 113
           +C RL  I+ I  +F   LCS
Sbjct: 4   ICSRLGRILLISAVFCVGLCS 24


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,760
Number of Sequences: 438
Number of extensions: 690
Number of successful extensions: 23
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 41
effective length of database: 128,385
effective search space used:  2567700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)