Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_G17
(217 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0544 - 23768808-23768910,23769005-23769030,23769379-237694... 31 0.096
04_04_0312 + 24314940-24315143,24316074-24316253,24316801-243170... 27 1.6
11_06_0254 - 21721667-21721718,21722025-21722647 27 2.1
05_02_0122 - 6840840-6841307 27 2.1
06_03_1116 - 27745419-27745553,27745772-27745901,27746208-277462... 27 2.7
03_01_0585 - 4331111-4331850,4331960-4332224 26 3.6
06_03_0714 - 23814826-23814997,23815080-23815164,23815680-238157... 25 6.3
03_06_0364 + 33392181-33392487,33392919-33392994,33393671-333937... 25 6.3
03_01_0220 + 1745719-1745806,1745893-1746062,1746170-1746359,174... 25 6.3
11_06_0634 - 25685216-25685329,25685407-25685511,25685681-256857... 25 8.3
08_01_0657 + 5674907-5674993,5675615-5676583 25 8.3
02_05_1039 + 33707196-33708815 25 8.3
02_04_0422 - 22761348-22762643 25 8.3
01_01_0538 - 3938389-3939727,3939828-3940203,3940299-3940516,394... 25 8.3
>02_04_0544 -
23768808-23768910,23769005-23769030,23769379-23769497,
23769542-23769668,23769842-23769905,23769981-23770095,
23770867-23771101,23771196-23771382,23771948-23772305,
23772432-23772465
Length = 455
Score = 31.5 bits (68), Expect = 0.096
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -1
Query: 184 PATPTAVKPPRVGPKTSLNHSIGSSDG-RCVQRAGT*STRAYDSRLLGIPR 35
P PT PP PKT+ + + SSDG R + + S YD R L + R
Sbjct: 24 PPYPTGSAPPVRLPKTACSATYFSSDGSRLLATVASASATVYDCRTLSVVR 74
>04_04_0312 +
24314940-24315143,24316074-24316253,24316801-24317030,
24317205-24317375,24317685-24317790,24318099-24318305,
24318646-24318806,24319001-24319103
Length = 453
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 202 SSLVNFPATPTAVKPPRVGPKTSLNHSIGSSD 107
SS ++ P P A+ PP +T SIGS+D
Sbjct: 49 SSRIDLPGRPAALVPPSGKKQTKEKISIGSTD 80
>11_06_0254 - 21721667-21721718,21722025-21722647
Length = 224
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = -1
Query: 187 FPATPTAVKPPRVGPKTSLNHSIGSSDGRCVQRAGT*STRAYDS 56
F + PT+ +P R+ ++ +H + S+DG+ + RAG +D+
Sbjct: 144 FASVPTSTQPNRMFVHSATSHGLVSNDGKQL-RAGLPQRTIFDA 186
>05_02_0122 - 6840840-6841307
Length = 155
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -1
Query: 121 IGSSDGRCVQRAGT*STRAYDSRLLGIPRLWG 26
+G+ G C + ++R Y S L+G+PR G
Sbjct: 109 VGAGGGGCTSSRASITSRVYFSGLIGLPRSIG 140
>06_03_1116 -
27745419-27745553,27745772-27745901,27746208-27746247,
27746318-27746426
Length = 137
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 7 GWGLQLSPINEEFLVSASHKLALITSL 87
GWGL I+++FL KLA++ SL
Sbjct: 60 GWGLHAIMIHDQFLRRMRCKLAMLLSL 86
>03_01_0585 - 4331111-4331850,4331960-4332224
Length = 334
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -1
Query: 193 VNFPATPTAVKPPR 152
VNFPATP A +P R
Sbjct: 164 VNFPATPAAARPRR 177
>06_03_0714 -
23814826-23814997,23815080-23815164,23815680-23815791,
23817203-23817304,23817375-23817447,23817918-23817997,
23818076-23818267,23818945-23819064,23819157-23819244,
23819319-23819353,23819447-23819518,23819860-23819931,
23820054-23821189,23822011-23822362
Length = 896
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/41 (21%), Positives = 23/41 (56%)
Frame = +1
Query: 37 EEFLVSASHKLALITSLPFVHTARRYYRLNDLVRSSDRHAV 159
++F+ +A +L + ++ R ++LNDLV+ ++ +
Sbjct: 665 DDFIKAAEQQLEMRNQCRIINQQARLWKLNDLVKRENKRDI 705
>03_06_0364 +
33392181-33392487,33392919-33392994,33393671-33393740,
33394291-33394320,33394724-33394867,33394954-33395058,
33395496-33395642,33396994-33397069,33397726-33397814,
33398178-33398269,33398351-33398390,33398475-33398531
Length = 410
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 184 PATPTAVKPPRVGPKTSLNHSIGSSDGRCVQRAG 83
P P+AV P +++ + G SDGRC AG
Sbjct: 72 PLLPSAV--PEFSCVFTVSRARGDSDGRCADSAG 103
>03_01_0220 +
1745719-1745806,1745893-1746062,1746170-1746359,
1748486-1748877,1749218-1749523
Length = 381
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 73 LITSLPFVHTARRYYRLND 129
L S PF+H R++YRL D
Sbjct: 278 LTWSRPFLHDKRKFYRLAD 296
>11_06_0634 -
25685216-25685329,25685407-25685511,25685681-25685740,
25685827-25685965,25686056-25686240,25686328-25686411,
25686499-25686621,25687088-25687267,25687364-25687433,
25687520-25687616,25687695-25687770,25688259-25688348,
25688383-25688529,25688647-25688715,25689004-25689177,
25689266-25689336,25689409-25689557,25690723-25690774,
25690865-25691120,25691196-25691287,25691420-25691541,
25691909-25692679,25692883-25692940,25693068-25693107,
25694462-25694595,25694685-25694793,25694896-25694991
Length = 1220
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 184 PATPTAVKPPRVGPKTSLNHSIGSSDGRCVQR 89
PA+PTA P R+ ++ S GS + +R
Sbjct: 37 PASPTASVPGRIEEDSAATKSAGSGEDAAAKR 68
>08_01_0657 + 5674907-5674993,5675615-5676583
Length = 351
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -1
Query: 184 PATPTAVKPPRVGPKTSLNHSIG 116
PA P V PP G SL+H +G
Sbjct: 154 PAAPANVLPPFSGRGLSLSHHLG 176
>02_05_1039 + 33707196-33708815
Length = 539
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 217 TSSK*SSLVNFPATPTAVKPPR 152
T+S SSL+ P +P+A PPR
Sbjct: 9 TTSPFSSLLLLPISPSAATPPR 30
>02_04_0422 - 22761348-22762643
Length = 431
Score = 25.0 bits (52), Expect = 8.3
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = +1
Query: 52 SASHKLALITSLPFVHTARRYYRLNDLVRSSDR--HAVASR-PSALRGS 189
+A K+ + +P+ TA ++ + D R +DR A+A R SA R S
Sbjct: 127 AADRKVPCVLMMPYTATACAHFGVPDEARDADRFPSAIARRFVSAFRSS 175
>01_01_0538 -
3938389-3939727,3939828-3940203,3940299-3940516,
3940607-3940769,3940866-3941100,3941186-3941353
Length = 832
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 88 PFVHTARRYYRLNDLVRSSDRHAVASRPS 174
PF AR+ YR++D +RH++ R S
Sbjct: 439 PFTDQARKRYRVDDDGLLEERHSLEERHS 467
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,379,039
Number of Sequences: 37544
Number of extensions: 109253
Number of successful extensions: 279
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 14,793,348
effective HSP length: 51
effective length of database: 12,878,604
effective search space used: 257572080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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