Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_G17
         (217 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068711-1|AAC17775.2| 1121|Caenorhabditis elegans Hypothetical ...    27   2.4  
Z82078-9|CAE11308.1|  949|Caenorhabditis elegans Hypothetical pr...    26   3.2  
Z82078-8|CAB04948.2|  947|Caenorhabditis elegans Hypothetical pr...    26   3.2  
U50197-2|AAA91255.2|  624|Caenorhabditis elegans Hypothetical pr...    26   3.2  
AL023844-13|CAE11312.1|  949|Caenorhabditis elegans Hypothetical...    26   3.2  
AL023844-12|CAA19535.2|  947|Caenorhabditis elegans Hypothetical...    26   3.2  
L10986-7|AAA28014.2|  362|Caenorhabditis elegans Hypothetical pr...    26   4.2  
AF016673-2|ABS19461.1|  320|Caenorhabditis elegans Hypothetical ...    26   4.2  
AF016673-1|AAB66121.1|  441|Caenorhabditis elegans Hypothetical ...    26   4.2  
Z70208-7|CAA94139.1|  287|Caenorhabditis elegans Hypothetical pr...    25   5.5  
AF003135-11|AAK18987.2| 1406|Caenorhabditis elegans Hypothetical...    25   5.5  
AC026301-7|AAK68900.2| 1142|Caenorhabditis elegans Hypothetical ...    25   5.5  
Z79601-2|CAB01886.1|  482|Caenorhabditis elegans Hypothetical pr...    25   7.3  
AC084159-2|AAK39359.1|  659|Caenorhabditis elegans Hypothetical ...    25   7.3  

>AF068711-1|AAC17775.2| 1121|Caenorhabditis elegans Hypothetical
           protein R09A1.1 protein.
          Length = 1121

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +3

Query: 84  PALCTHRPSLLPIE*FSEVFGPTR-GGFT 167
           P  C ++ S +P+E  S +  PTR GGFT
Sbjct: 515 PEQCGNKHSAMPLELVSYIVVPTRYGGFT 543


>Z82078-9|CAE11308.1|  949|Caenorhabditis elegans Hypothetical
           protein Y48A6B.11b protein.
          Length = 949

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 217 TSSK*SSLVNFPATPTAVKPPRVGPKTSLNHSIGS 113
           TS K     +  ATP + KPPR  P+T L+    S
Sbjct: 119 TSKKSQKPRSSDATPVSSKPPRYLPRTPLSEQYTS 153


>Z82078-8|CAB04948.2|  947|Caenorhabditis elegans Hypothetical
           protein Y48A6B.11a protein.
          Length = 947

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 217 TSSK*SSLVNFPATPTAVKPPRVGPKTSLNHSIGS 113
           TS K     +  ATP + KPPR  P+T L+    S
Sbjct: 117 TSKKSQKPRSSDATPVSSKPPRYLPRTPLSEQYTS 151


>U50197-2|AAA91255.2|  624|Caenorhabditis elegans Hypothetical
           protein F25E2.2 protein.
          Length = 624

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -3

Query: 152 CRSEDLTKSFNR**RRAVCTKGRDVINASL*LALTRNSSFMGDNC-KPQ 9
           C+ ED  K FNR   RA+C K  D+ N +     T  S+ +   C KPQ
Sbjct: 574 CKCED-QKEFNRKIVRALCPKTCDICNETHPSVSTILSTRISGACLKPQ 621


>AL023844-13|CAE11312.1|  949|Caenorhabditis elegans Hypothetical
           protein Y48A6B.11b protein.
          Length = 949

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 217 TSSK*SSLVNFPATPTAVKPPRVGPKTSLNHSIGS 113
           TS K     +  ATP + KPPR  P+T L+    S
Sbjct: 119 TSKKSQKPRSSDATPVSSKPPRYLPRTPLSEQYTS 153


>AL023844-12|CAA19535.2|  947|Caenorhabditis elegans Hypothetical
           protein Y48A6B.11a protein.
          Length = 947

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 217 TSSK*SSLVNFPATPTAVKPPRVGPKTSLNHSIGS 113
           TS K     +  ATP + KPPR  P+T L+    S
Sbjct: 117 TSKKSQKPRSSDATPVSSKPPRYLPRTPLSEQYTS 151


>L10986-7|AAA28014.2|  362|Caenorhabditis elegans Hypothetical
           protein F10E9.3 protein.
          Length = 362

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +2

Query: 77  LRPCPLYTPPVATT 118
           LRP P  TPP+ATT
Sbjct: 131 LRPVPSKTPPIATT 144


>AF016673-2|ABS19461.1|  320|Caenorhabditis elegans Hypothetical
           protein T06D4.1b protein.
          Length = 320

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 88  PFVHTARRYYRLNDLVRSSDRHAVAS 165
           PF+  AR +YRL+D   +S+  A AS
Sbjct: 226 PFLKKARIFYRLSDGAETSEAPAEAS 251


>AF016673-1|AAB66121.1|  441|Caenorhabditis elegans Hypothetical
           protein T06D4.1a protein.
          Length = 441

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 88  PFVHTARRYYRLNDLVRSSDRHAVAS 165
           PF+  AR +YRL+D   +S+  A AS
Sbjct: 347 PFLKKARIFYRLSDGAETSEAPAEAS 372


>Z70208-7|CAA94139.1|  287|Caenorhabditis elegans Hypothetical
           protein F54B11.7 protein.
          Length = 287

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -1

Query: 184 PATPTAVKPPRVGPKTSLNHS-IGSSD 107
           P TP A KP    PKTSL+ S  GS+D
Sbjct: 69  PTTPPA-KPKEPAPKTSLSKSDSGSAD 94


>AF003135-11|AAK18987.2| 1406|Caenorhabditis elegans Hypothetical
           protein W03F11.4 protein.
          Length = 1406

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = -3

Query: 200 KFGQLPRNADGREATACRSEDLTKSFNR**RRAVCTKGRDVIN 72
           K GQ  ++ADGREA A ++   T S N     A+  +G   IN
Sbjct: 625 KSGQSMKSADGREALALKT-SFTDSQNTVKDLALAVRGLTQIN 666


>AC026301-7|AAK68900.2| 1142|Caenorhabditis elegans Hypothetical
           protein Y54F10BM.9 protein.
          Length = 1142

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
 Frame = -1

Query: 190 NFPATPTA--VKPPRVGPKTSL 131
           N P + TA  VKPP +GP  SL
Sbjct: 21  NVPGSSTALEVKPPTIGPSQSL 42


>Z79601-2|CAB01886.1|  482|Caenorhabditis elegans Hypothetical
           protein K09A9.5 protein.
          Length = 482

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +3

Query: 69  RVDYVPALCTHRPSLLPIE*FSEVFGPTRGGFTAVGVAGKLTKLDH 206
           R+DYV  +C  +   L +E    +  PTR  +    + G+LT++ +
Sbjct: 157 RLDYVSMMCNEQAWSLAVEKLLGIDIPTRAKYIRT-LMGELTRIQN 201


>AC084159-2|AAK39359.1|  659|Caenorhabditis elegans Hypothetical
           protein Y73B3A.1 protein.
          Length = 659

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 194 GQLPRNADGREATACRSE 141
           GQLPRN+    ATA R +
Sbjct: 340 GQLPRNSPAANATAARED 357


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,043,996
Number of Sequences: 27780
Number of extensions: 81285
Number of successful extensions: 177
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 12,740,198
effective HSP length: 51
effective length of database: 11,323,418
effective search space used: 226468360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)