Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_G17
         (217 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   3.8  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          19   5.1  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           19   8.8  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    19   8.8  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            19   8.8  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.8 bits (39), Expect = 3.8
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 160  PPRVGPKTSLNHSIGSSDGRC 98
            PPR+G    L+H  G  D  C
Sbjct: 1704 PPRMGSAEGLSHR-GMEDEIC 1723


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 19.4 bits (38), Expect = 5.1
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = -1

Query: 196 LVNFPATPTAVKPPRVGPKTSLNHSI 119
           L N+   PT    P   P T+ + +I
Sbjct: 373 LGNYSLVPTTTASPTTEPSTTTSTTI 398


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 18.6 bits (36), Expect = 8.8
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 76  STRAYDSRLLGIPRLWGIIANPNL 5
           S   +D+R   IP+  G+I   NL
Sbjct: 456 SVWCWDTRKEYIPQNLGVIGTSNL 479


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 18.6 bits (36), Expect = 8.8
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -1

Query: 199 SLVNFPATPT 170
           +  +FPATPT
Sbjct: 197 NFAHFPATPT 206


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 18.6 bits (36), Expect = 8.8
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = +1

Query: 13 GLQLSPINEEFLV 51
          G+Q+SP+ E  ++
Sbjct: 59 GVQVSPVQENIVI 71


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,093
Number of Sequences: 438
Number of extensions: 957
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3154875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)