Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_G16
         (199 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   1.4  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    24   3.2  
SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomy...    23   4.2  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    23   5.6  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    23   5.6  
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo...    23   7.4  
SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|c...    23   7.4  
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...    22   9.7  
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...    22   9.7  

>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 122 VCC*LNATVAHPIIKVNNNLCFKVNIFSTKC 30
           +CC L    + P+I  ++NLC   N FS  C
Sbjct: 34  LCCSLAVFPSIPLINTHSNLCLFSN-FSHSC 63


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 115 QHTHSHGGEAPAYKYSKSA 171
           Q  +SHG +AP +  SKSA
Sbjct: 707 QSQNSHGDDAPNWSRSKSA 725


>SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 318

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = +1

Query: 160 SKSANDQHKETRK 198
           SKSA+DQ KE+RK
Sbjct: 12  SKSASDQTKESRK 24


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 109 SQQHTHSHGGEAPAYKYSKSANDQHKETRK 198
           S  H H H      +K SKS++ +HKE  K
Sbjct: 552 SSHHKHHH------HKKSKSSSSKHKENDK 575


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = +2

Query: 89  DVQL*HLVNNTRIHMAVKHLLINTLKAQMINTKKQE 196
           D++  +L NNT + +  KH+ +     ++ N + +E
Sbjct: 846 DIRNLYLSNNTFVTLDCKHMFLGVRYLELANVQLKE 881


>SPBC19G7.10c |||topoisomerase associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 744

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 79  FIIGCATVAFSQQH 120
           F+  CAT A S+QH
Sbjct: 692 FLAACATAASSEQH 705


>SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 135

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -2

Query: 198 FSCFFVLIICAFRVFISRCFTAM 130
           F CFF+L        + +C +AM
Sbjct: 24  FHCFFLLCFTVMLCVVQQCSSAM 46


>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 36  RTKYVNFKAKVIINFYNRMCNCSI*ST 116
           + KY   K ++++ F NR   C I S+
Sbjct: 41  KNKYNAPKYRLVVRFSNRFVTCQIVSS 67


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 36  RTKYVNFKAKVIINFYNRMCNCSI*ST 116
           + KY   K ++++ F NR   C I S+
Sbjct: 41  KNKYNAPKYRLVVRFSNRFVTCQIVSS 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 715,866
Number of Sequences: 5004
Number of extensions: 9640
Number of successful extensions: 34
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 45
effective length of database: 2,137,298
effective search space used: 42745960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)