Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_G16
         (199 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0707 - 20212190-20214592                                         28   1.2  
11_06_0353 - 22602134-22602373,22602854-22603228                       27   2.8  
11_06_0092 + 19973364-19975983,19976272-19976648                       25   8.5  
11_04_0151 + 14135390-14135630,14135723-14136132                       25   8.5  
11_04_0150 + 14127378-14127612,14127705-14128144                       25   8.5  

>08_02_0707 - 20212190-20214592
          Length = 800

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = +1

Query: 43  NMLTLKQRLLLTFIIGCATVAFSQQHTHSHGGEAPAYKYSKSANDQHKET 192
           ++LT+    L+  +IG   V F ++H H+HGG   ++ +S S +  H  +
Sbjct: 465 SLLTVSIGGLVVNVIGL--VFFHEEHHHAHGGSC-SHSHSHSHSHSHSHS 511


>11_06_0353 - 22602134-22602373,22602854-22603228
          Length = 204

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = -3

Query: 140 SPPCECVCC*LNATVAHPIIKVNNNLCFKVNIFSTKCL 27
           SPP +   C ++ T  HP+I    +    +N+   +C+
Sbjct: 103 SPPNDNTWCSIHETSQHPLIDCKEDYFQSINLSGRRCM 140


>11_06_0092 + 19973364-19975983,19976272-19976648
          Length = 998

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +1

Query: 49  LTLKQRLLLTFIIGCATVAFSQQHTHSHGGEAPAYKYSKSAN 174
           LTL QR+ +   + CA       H H HG E   +   KS+N
Sbjct: 792 LTLHQRVTILLDVACAL-----DHLHFHGPEPIVHCDIKSSN 828


>11_04_0151 + 14135390-14135630,14135723-14136132
          Length = 216

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 94  ATVAFSQQHTHSHGGEAPAYKY 159
           A V   QQH + H GEA  ++Y
Sbjct: 187 ARVLHQQQHHNRHSGEARPHRY 208


>11_04_0150 + 14127378-14127612,14127705-14128144
          Length = 224

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 94  ATVAFSQQHTHSHGGEAPAYKY 159
           A V   QQH + HGG+A   +Y
Sbjct: 194 ARVPHQQQHYNRHGGDARPQRY 215


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,317,791
Number of Sequences: 37544
Number of extensions: 57001
Number of successful extensions: 179
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 14,793,348
effective HSP length: 45
effective length of database: 13,103,868
effective search space used: 262077360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)