Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_G16
(199 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93396-3|CAB07712.1| 597|Caenorhabditis elegans Hypothetical pr... 27 2.4
AF101318-2|AAK68599.1| 331|Caenorhabditis elegans Seven tm rece... 26 3.2
U41996-1|AAA83471.2| 306|Caenorhabditis elegans Serpentine rece... 26 4.2
Z81056-1|CAB02902.1| 319|Caenorhabditis elegans Hypothetical pr... 25 7.4
U80447-10|AAB37814.1| 477|Caenorhabditis elegans Hypothetical p... 25 7.4
U23529-12|AAL13323.1| 561|Caenorhabditis elegans Cation diffusi... 25 7.4
U23529-11|AAK39165.1| 519|Caenorhabditis elegans Cation diffusi... 25 7.4
AF016446-7|AAC24174.1| 330|Caenorhabditis elegans Serpentine re... 25 7.4
U97000-9|AAC47998.1| 345|Caenorhabditis elegans Seven tm recept... 25 9.8
U28738-3|AAA68310.2| 468|Caenorhabditis elegans Hypothetical pr... 25 9.8
>Z93396-3|CAB07712.1| 597|Caenorhabditis elegans Hypothetical
protein ZC15.5 protein.
Length = 597
Score = 26.6 bits (56), Expect = 2.4
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +1
Query: 10 LFFWMFRHFVLNMLTLKQRLLLTFIIGCATVAFSQ-QHTHS 129
+FFW+F HF ++ L L ++ ++ FS+ +HTH+
Sbjct: 517 IFFWIFTHFFAPLVHL---LHFCDVLSTISLQFSRIEHTHA 554
>AF101318-2|AAK68599.1| 331|Caenorhabditis elegans Seven tm
receptor protein 66 protein.
Length = 331
Score = 26.2 bits (55), Expect = 3.2
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -3
Query: 158 YL*AGASPPCECVCC*LNATVAHPIIKVNNNLCFKVN 48
Y G PPC+C+ L + IIK ++C K N
Sbjct: 286 YSLVGFYPPCDCISVALVVSEYRNIIKNKISMCCKNN 322
>U41996-1|AAA83471.2| 306|Caenorhabditis elegans Serpentine
receptor, class sx protein22 protein.
Length = 306
Score = 25.8 bits (54), Expect = 4.2
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 86 IIKVNNNLCFKVNIFSTKCLNIQ 18
I + NNLCF ++I+ LN+Q
Sbjct: 71 IYNITNNLCFFLSIYGIFSLNMQ 93
>Z81056-1|CAB02902.1| 319|Caenorhabditis elegans Hypothetical
protein F09F3.1 protein.
Length = 319
Score = 25.0 bits (52), Expect = 7.4
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 45 YVNFKAKVIINFYN 86
Y+NF A +I NF+N
Sbjct: 189 YINFSATIITNFFN 202
>U80447-10|AAB37814.1| 477|Caenorhabditis elegans Hypothetical
protein F55F8.9 protein.
Length = 477
Score = 25.0 bits (52), Expect = 7.4
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Frame = +1
Query: 70 LLTFIIGCATVA----FSQQHTHSHGGEAPAYKYSKSANDQH 183
LL IG A + F H HSH G + + S+ D +
Sbjct: 434 LLVMFIGFALIGALRGFESSHGHSHSGSTEPHFHGNSSFDDY 475
>U23529-12|AAL13323.1| 561|Caenorhabditis elegans Cation diffusion
facilitator familyprotein 1, isoform b protein.
Length = 561
Score = 25.0 bits (52), Expect = 7.4
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Frame = +1
Query: 40 LNMLTLKQRLLLTFIIGCATVAFSQ----QHTHSHGGEAPAYKYSKSANDQH--KETRK 198
++M+T ++L+ IG F H HSHGG + + + S H K+T+K
Sbjct: 207 VHMITHPLQVLVIGFIGLLINLFGMFNLSGHGHSHGGGSHGHSHGGSHGHSHNNKKTKK 265
>U23529-11|AAK39165.1| 519|Caenorhabditis elegans Cation diffusion
facilitator familyprotein 1, isoform a protein.
Length = 519
Score = 25.0 bits (52), Expect = 7.4
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Frame = +1
Query: 40 LNMLTLKQRLLLTFIIGCATVAFSQ----QHTHSHGGEAPAYKYSKSANDQH--KETRK 198
++M+T ++L+ IG F H HSHGG + + + S H K+T+K
Sbjct: 165 VHMITHPLQVLVIGFIGLLINLFGMFNLSGHGHSHGGGSHGHSHGGSHGHSHNNKKTKK 223
>AF016446-7|AAC24174.1| 330|Caenorhabditis elegans Serpentine
receptor, class h protein21 protein.
Length = 330
Score = 25.0 bits (52), Expect = 7.4
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 31 HFVLNMLTLKQRLLLTFIIGCATVAFSQQHTHSHGGEAPAYK 156
HF +N L Q +LTF I C+ V S+ + +YK
Sbjct: 85 HFGINSLV--QFYILTFSIECSAVCISEMFYFRYKASLVSYK 124
>U97000-9|AAC47998.1| 345|Caenorhabditis elegans Seven tm receptor
protein 135 protein.
Length = 345
Score = 24.6 bits (51), Expect = 9.8
Identities = 6/14 (42%), Positives = 11/14 (78%)
Frame = -2
Query: 192 CFFVLIICAFRVFI 151
CFF ++ CA+ +F+
Sbjct: 218 CFFTIVFCAYSIFM 231
>U28738-3|AAA68310.2| 468|Caenorhabditis elegans Hypothetical
protein T28D9.4 protein.
Length = 468
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 25 FRHFVLNMLTLKQRLLLTFIIGCATVAFSQQHT 123
+RHF+ +LT+ L++T ++ T F HT
Sbjct: 346 YRHFIPLILTVVIELVITGLVSYQTGEFIFSHT 378
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,029,861
Number of Sequences: 27780
Number of extensions: 57753
Number of successful extensions: 164
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 12,740,198
effective HSP length: 45
effective length of database: 11,490,098
effective search space used: 229801960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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