Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_G13
         (189 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po...    46   9e-07
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    27   0.43 
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    25   1.7  
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    24   2.3  
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch...    24   2.3  
SPAC4F10.05c |||mitochondrial lipoate-protein ligase |Schizosacc...    23   4.0  
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc...    23   7.0  
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    22   9.3  

>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 45.6 bits (103), Expect = 9e-07
 Identities = 21/54 (38%), Positives = 34/54 (62%)
 Frame = +2

Query: 26  GEVTKSVFMSQSTDIYTNLALEDWMYRNMDFTNHHVMMVWRNEPCVVIGEHQNP 187
           G +   V + +S + Y NLALE+++Y N   T  H ++++ N P V+IG +QNP
Sbjct: 21  GLLQAKVVVCKSVNPYFNLALENYLYENS--TAKHCLLLYTNSPSVIIGRNQNP 72


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 26.6 bits (56), Expect = 0.43
 Identities = 9/22 (40%), Positives = 18/22 (81%)
 Frame = +2

Query: 29  EVTKSVFMSQSTDIYTNLALED 94
           E+ +S+F+SQ+  ++ N++LED
Sbjct: 728 EIPESLFLSQNVFVFLNVSLED 749


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1159

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 143  TPSSRGDL*SPCYGTSNPPMPN 78
            TPS+ G   +P +G  N P P+
Sbjct: 1058 TPSNAGSTAAPMFGAGNTPNPS 1079


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1028

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 65  DIYTNLALEDWMYRNMDFTN 124
           DI +   LEDW Y N+ +T+
Sbjct: 542 DILSEDELEDWWYLNLRYTS 561


>SPBC32H8.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 15  YHKRGRLQSQSSCLNPLTFIQIWHWRI 95
           YHK  R  S++   +PL     W+WR+
Sbjct: 199 YHKMCRFFSRNFYKHPLMQQYEWYWRL 225


>SPAC4F10.05c |||mitochondrial lipoate-protein ligase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 219

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +3

Query: 3   SARGYHKRGRLQSQSSCLNPLTFIQIWHWRIGC 101
           +A G H R  + S    LN  T ++ +++ +GC
Sbjct: 150 AAIGIHLRRNITSHGLALNVSTDLKYFNYIVGC 182


>SPBC19G7.06 |mbx1||MADS-box transcription factor
           Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -1

Query: 54  DMKTDFVTSPSCGSLVP 4
           D  TDF+ SPS G L P
Sbjct: 264 DGLTDFIQSPSSGYLDP 280


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = -2

Query: 113 PCYGTSNPPMPNLYKC 66
           P   T NP  P  YKC
Sbjct: 13  PSRSTKNPDAPRPYKC 28


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 845,568
Number of Sequences: 5004
Number of extensions: 12819
Number of successful extensions: 36
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 43
effective length of database: 2,147,306
effective search space used: 40798814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)