Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_G13
         (189 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0197 + 13417143-13417335,13417686-13417729,13417965-134181...    27   2.8  
12_01_0797 + 7300370-7300506,7300682-7300798,7301903-7302443,730...    26   4.9  
02_05_0182 + 26530799-26530852,26531677-26532927,26533250-265333...    25   8.5  

>09_03_0197 +
           13417143-13417335,13417686-13417729,13417965-13418107,
           13418369-13418481,13418774-13419015
          Length = 244

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 189 HGFWCSPITTHGSLRH 142
           + FW SP+T HG L++
Sbjct: 81  YAFWISPVTKHGHLKN 96


>12_01_0797 + 7300370-7300506,7300682-7300798,7301903-7302443,
            7302885-7304042,7304133-7304291,7304397-7304504,
            7305045-7305304,7305936-7306101,7307025-7307050,
            7307318-7307402,7307486-7307695,7308815-7308872,
            7308964-7309037,7309323-7309373,7309576-7309664,
            7310027-7310104,7310164-7310269
          Length = 1140

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/47 (23%), Positives = 21/47 (44%)
 Frame = +2

Query: 14   LPQEGEVTKSVFMSQSTDIYTNLALEDWMYRNMDFTNHHVMMVWRNE 154
            LP       ++   Q+   Y + +LE W+Y  +   +H  +   +NE
Sbjct: 1085 LPYAAPHADAIVKKQTCAFYVSSSLEMWVYMTVYRQSHETICTLKNE 1131


>02_05_0182 +
           26530799-26530852,26531677-26532927,26533250-26533335,
           26533673-26533733
          Length = 483

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
 Frame = +2

Query: 47  FMSQSTDIYTNLALEDWMYRNMDFTNHHVMMV--WRNEPCVVIGEH 178
           F   S D+Y+NL         + F  H V +   +R E C +I  +
Sbjct: 188 FRVDSMDVYSNLLYAKESSTALSFLAHRVFLTDKYRPESCCIIANY 233


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,761,566
Number of Sequences: 37544
Number of extensions: 92290
Number of successful extensions: 164
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 14,793,348
effective HSP length: 42
effective length of database: 13,216,500
effective search space used: 264330000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)