Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_G13
(189 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92780-3|CAB07178.2| 289|Caenorhabditis elegans Hypothetical pr... 48 1e-06
Z11115-18|CAI46594.1| 243|Caenorhabditis elegans Hypothetical p... 30 0.26
Z11115-17|CAA77455.3| 228|Caenorhabditis elegans Hypothetical p... 30 0.26
AY513235-1|AAS21678.1| 228|Caenorhabditis elegans thiamine pyro... 30 0.26
AC024746-6|AAT92059.1| 1361|Caenorhabditis elegans Patched famil... 29 0.61
AC024746-5|AAT92058.1| 1358|Caenorhabditis elegans Patched famil... 29 0.61
U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical pr... 27 1.8
AC006708-16|AAF60431.2| 312|Caenorhabditis elegans Hypothetical... 27 1.8
AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3... 26 3.2
AF038615-1|AAB94149.3| 532|Caenorhabditis elegans Hypothetical ... 26 4.3
AC006712-7|AAK39318.2| 264|Caenorhabditis elegans Hypothetical ... 26 4.3
Z99269-1|CAB16467.1| 1461|Caenorhabditis elegans Hypothetical pr... 25 7.5
Z81089-3|CAB03137.1| 275|Caenorhabditis elegans Hypothetical pr... 25 9.9
Z81038-7|CAB02764.1| 453|Caenorhabditis elegans Hypothetical pr... 25 9.9
AF039569-1|AAB99999.1| 451|Caenorhabditis elegans aryl hydrocar... 25 9.9
>Z92780-3|CAB07178.2| 289|Caenorhabditis elegans Hypothetical
protein C45G3.3 protein.
Length = 289
Score = 47.6 bits (108), Expect = 1e-06
Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Frame = +2
Query: 41 SVFMSQSTDIYTNLALEDWMYRNMDFT-NHHVMMVWRNEPCVVIGEHQNP 187
+V S S+ I+ NLA E+ ++R + N ++++W N P VVIG HQNP
Sbjct: 11 TVLKSTSSCIFENLAYEEHIFRTHNVAQNGEILLMWSNRPAVVIGRHQNP 60
>Z11115-18|CAI46594.1| 243|Caenorhabditis elegans Hypothetical
protein ZK637.9b protein.
Length = 243
Score = 29.9 bits (64), Expect = 0.26
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 2 FGTRLPQEGEVTKS-VFMSQSTDIYTNLALEDWMYR 106
FG + EVT S VF+ S+ + ++ LE+W+Y+
Sbjct: 204 FGKLISTSNEVTTSQVFLKSSSSLIFSIELENWVYK 239
>Z11115-17|CAA77455.3| 228|Caenorhabditis elegans Hypothetical
protein ZK637.9a protein.
Length = 228
Score = 29.9 bits (64), Expect = 0.26
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 2 FGTRLPQEGEVTKS-VFMSQSTDIYTNLALEDWMYR 106
FG + EVT S VF+ S+ + ++ LE+W+Y+
Sbjct: 189 FGKLISTSNEVTTSQVFLKSSSSLIFSIELENWVYK 224
>AY513235-1|AAS21678.1| 228|Caenorhabditis elegans thiamine
pyrophosphokinase protein.
Length = 228
Score = 29.9 bits (64), Expect = 0.26
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 2 FGTRLPQEGEVTKS-VFMSQSTDIYTNLALEDWMYR 106
FG + EVT S VF+ S+ + ++ LE+W+Y+
Sbjct: 189 FGKLISTSNEVTTSQVFLKSSSSLIFSIELENWVYK 224
>AC024746-6|AAT92059.1| 1361|Caenorhabditis elegans Patched family
protein 3, isoform b protein.
Length = 1361
Score = 28.7 bits (61), Expect = 0.61
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 21 KRGRLQSQSSCLNPLTFIQIWHWRIGC 101
KRG+ + L F Q+W +RIGC
Sbjct: 59 KRGKAVGNTVALTARAFFQLWLFRIGC 85
>AC024746-5|AAT92058.1| 1358|Caenorhabditis elegans Patched family
protein 3, isoform a protein.
Length = 1358
Score = 28.7 bits (61), Expect = 0.61
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 21 KRGRLQSQSSCLNPLTFIQIWHWRIGC 101
KRG+ + L F Q+W +RIGC
Sbjct: 59 KRGKAVGNTVALTARAFFQLWLFRIGC 85
>U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical protein
F30H5.3 protein.
Length = 1599
Score = 27.1 bits (57), Expect = 1.8
Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 2/21 (9%)
Frame = -2
Query: 116 SPC--YGTSNPPMPNLYKCQW 60
+PC + N P PN Y CQW
Sbjct: 1060 APCDPFNPPNAPCPNGYSCQW 1080
>AC006708-16|AAF60431.2| 312|Caenorhabditis elegans Hypothetical
protein Y110A7A.7 protein.
Length = 312
Score = 27.1 bits (57), Expect = 1.8
Identities = 8/18 (44%), Positives = 9/18 (50%)
Frame = -1
Query: 180 WCSPITTHGSLRHTIITW 127
WC P HGS H + W
Sbjct: 227 WCIPFYNHGSYHHGVEVW 244
>AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3
protein.
Length = 689
Score = 26.2 bits (55), Expect = 3.2
Identities = 9/28 (32%), Positives = 13/28 (46%)
Frame = +2
Query: 74 TNLALEDWMYRNMDFTNHHVMMVWRNEP 157
+NL + W Y D ++ W NEP
Sbjct: 99 SNLFINGWNYGQADVKGKNIEFSWENEP 126
>AF038615-1|AAB94149.3| 532|Caenorhabditis elegans Hypothetical
protein R02D3.3 protein.
Length = 532
Score = 25.8 bits (54), Expect = 4.3
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = +2
Query: 62 TDIYTNLALEDWMYRNMDFTNHHVMMVWRNEPCVVIGEHQNP 187
TD + N ++ED ++RN + M W E + ++ P
Sbjct: 400 TDYFQNSSVEDILHRNEMLLDQQEMETWEMEEAMETDNNEVP 441
>AC006712-7|AAK39318.2| 264|Caenorhabditis elegans Hypothetical
protein Y119C1B.9 protein.
Length = 264
Score = 25.8 bits (54), Expect = 4.3
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +2
Query: 95 WMYRNMDFTNHHVMMVWRNEPCVVIGEHQN 184
WM+R D N WR PC EH+N
Sbjct: 76 WMFRPSDSVNAQ----WREFPCAKKEEHKN 101
>Z99269-1|CAB16467.1| 1461|Caenorhabditis elegans Hypothetical
protein W10C6.1 protein.
Length = 1461
Score = 25.0 bits (52), Expect = 7.5
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 10/60 (16%)
Frame = +2
Query: 17 PQEGEVTKS--VFMSQS-TDIYTNLALEDW-------MYRNMDFTNHHVMMVWRNEPCVV 166
P+EG + K+ +F+S +D+Y NL +++N + T +++ ++EPCVV
Sbjct: 95 PKEGAIPKANKIFISNFLSDMYINLVSVTGEVMKIIPIWKNAETTRKNLLEKGKHEPCVV 154
>Z81089-3|CAB03137.1| 275|Caenorhabditis elegans Hypothetical
protein F53H4.4 protein.
Length = 275
Score = 24.6 bits (51), Expect = 9.9
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 29 EVTKSVFMSQSTDIYTNLALEDWMYRNMDFTNHHVMMVWRNEP 157
E T+ +F DI + + RNMD T H+M++ + P
Sbjct: 134 EYTELLFSFPHYDIEYSFEGSYGLSRNMDLTETHIMLLSKLTP 176
>Z81038-7|CAB02764.1| 453|Caenorhabditis elegans Hypothetical
protein C25A1.11 protein.
Length = 453
Score = 24.6 bits (51), Expect = 9.9
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 38 KSVFMSQSTDIYTNLALEDWMYRNMDFTNH 127
K ++++ S NL EDW+ RN++ H
Sbjct: 139 KVLYVADSITPVLNLKQEDWLQRNLNELIH 168
>AF039569-1|AAB99999.1| 451|Caenorhabditis elegans aryl hydrocarbon
receptor nucleartranslocator ortholog AHA-1 protein.
Length = 451
Score = 24.6 bits (51), Expect = 9.9
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 38 KSVFMSQSTDIYTNLALEDWMYRNMDFTNH 127
K ++++ S NL EDW+ RN++ H
Sbjct: 139 KVLYVADSITPVLNLKQEDWLQRNLNELIH 168
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,769,269
Number of Sequences: 27780
Number of extensions: 75703
Number of successful extensions: 181
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 12,740,198
effective HSP length: 42
effective length of database: 11,573,438
effective search space used: 231468760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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