Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_G13
         (189 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   1.8  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    20   2.3  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    18   9.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    18   9.5  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
 Frame = -2

Query: 185 DFGVLQ----SQHMVHCATPSSRGDL*SPCYGTSNPPMPNL 75
           +FGV Q    S   +  A  S  G    P  G   PP+PN+
Sbjct: 383 NFGVSQVSPVSMSALVSAVRSPAGGQLPPSAGAPMPPIPNM 423


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
          protein.
          Length = 500

 Score = 20.2 bits (40), Expect = 2.3
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1

Query: 33 TSPSCGSLVP 4
          TSP+CGS  P
Sbjct: 44 TSPACGSETP 53


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -1

Query: 168 ITTHGSLRH 142
           +TTH SL+H
Sbjct: 51  LTTHKSLQH 59


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 6/14 (42%), Positives = 7/14 (50%)
 Frame = +2

Query: 104 RNMDFTNHHVMMVW 145
           R+MD   H   M W
Sbjct: 92  RSMDLNAHREQMSW 105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,562
Number of Sequences: 438
Number of extensions: 968
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 42
effective length of database: 127,947
effective search space used:  2558940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)