Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_G12
         (289 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0596 + 34964109-34964189,34964286-34964481,34964567-349647...    27   3.2  
12_02_0354 + 17881987-17881992,17882066-17882092,17882318-178823...    26   5.6  
12_02_0599 + 20897093-20898357,20898507-20898589,20899840-208999...    25   7.4  
10_08_0336 + 16896448-16896951                                         25   9.8  
10_08_0324 + 16747117-16747330,16747432-16747559,16747675-167477...    25   9.8  

>03_06_0596 + 34964109-34964189,34964286-34964481,34964567-34964775,
            34964868-34964970,34965053-34965227,34965617-34965883,
            34965966-34966311,34966396-34966533,34966645-34966770,
            34966866-34967078,34967171-34967462,34967559-34967755,
            34967844-34968194,34968290-34968874
          Length = 1092

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 19/69 (27%), Positives = 31/69 (44%)
 Frame = +1

Query: 25   SVFCNMYQLYKSPSAPVCVKARLVKVLFLQRQSI*INRQSICDFNYKNEGFISCNRRYPF 204
            S++C   +     SAP+ +  RL +VL     SI I   + C   Y   G + C  R+ +
Sbjct: 806  SIYCIPKRAAFKGSAPLNLSDRLHQVLRWALGSIEIFFSNHCPLWYGYGGGLKCLERFSY 865

Query: 205  CHYACYRYT 231
             +   Y +T
Sbjct: 866  INSIVYPWT 874


>12_02_0354 +
           17881987-17881992,17882066-17882092,17882318-17882392,
           17882490-17882606,17882789-17882875,17882919-17883119
          Length = 170

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 256 YICWVHVTLYSDSRRSDKKGTD 191
           ++  VH+ LYS+S RS  KG D
Sbjct: 33  FVGHVHIHLYSNSWRSKVKGVD 54


>12_02_0599 +
           20897093-20898357,20898507-20898589,20899840-20899903,
           20900057-20900354,20900385-20900426
          Length = 583

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 268 PFGGYICWVHVTL 230
           PFG Y+CWV   L
Sbjct: 219 PFGSYLCWVDYCL 231


>10_08_0336 + 16896448-16896951
          Length = 167

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +1

Query: 61  PSAPVCVKARLVKVLFLQRQSI*INRQSICDFNYKNEGFISCNRRYPF 204
           P +P   + + V+ LF  R+   + ++  C +  ++EG   C R Y F
Sbjct: 49  PESPEFYR-KTVRFLFKNREKGILVKKENCIWRTQHEGIRFCRREYAF 95


>10_08_0324 +
           16747117-16747330,16747432-16747559,16747675-16747744,
           16747832-16747988,16748089-16748701,16749132-16749653,
           16749686-16750279,16750359-16750709,16750808-16751395
          Length = 1078

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 18/69 (26%), Positives = 29/69 (42%)
 Frame = +1

Query: 25  SVFCNMYQLYKSPSAPVCVKARLVKVLFLQRQSI*INRQSICDFNYKNEGFISCNRRYPF 204
           SV+C   +     SAP+ +  RL +VL     S+ I     C   Y   G +    R+ +
Sbjct: 791 SVYCTPARAAFKGSAPINLSDRLHQVLRWALGSVEIFMSRHCPLWYAYGGRLKWLERFAY 850

Query: 205 CHYACYRYT 231
            +   Y +T
Sbjct: 851 TNTIVYPFT 859


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,142,593
Number of Sequences: 37544
Number of extensions: 107299
Number of successful extensions: 170
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 304131700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)