Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_G12
         (289 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK026357-1|BAB15459.1|  258|Homo sapiens protein ( Homo sapiens ...    29   3.6  
BC040359-1|AAH40359.1| 1004|Homo sapiens Hermansky-Pudlak syndro...    28   4.8  
BC022062-1|AAH22062.2|  858|Homo sapiens HPS3 protein protein.         28   4.8  
BC016901-1|AAH16901.1|  372|Homo sapiens HPS3 protein protein.         28   4.8  
AY033141-1|AAK53457.1| 1004|Homo sapiens Hermansky-Pudlak syndro...    28   4.8  
AL833878-1|CAD38735.1|  565|Homo sapiens hypothetical protein pr...    28   4.8  
AK056575-1|BAB71221.1|  804|Homo sapiens protein ( Homo sapiens ...    28   4.8  
AF375663-1|AAK84131.1| 1004|Homo sapiens Hermansky-Pudlak syndro...    28   4.8  

>AK026357-1|BAB15459.1|  258|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ22704 fis, clone HSI12602. ).
          Length = 258

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -1

Query: 274 CHPFGGYICWVHVTLYSDSRRSDKKGTDDCKK*SLHFY 161
           C  +G    WVHV + SDS  +DK  T+D  K  L  +
Sbjct: 199 CSHYGLIYPWVHVVISSDS-LADKNYTEDLSKLQLPLF 235


>BC040359-1|AAH40359.1| 1004|Homo sapiens Hermansky-Pudlak syndrome
           3 protein.
          Length = 1004

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 274 CHPFGGYICWVHVTLYSDSRRSDKKGTDDCKK 179
           C  +G    WVHV + SDS  +DK  T+D  K
Sbjct: 831 CSHYGLIYPWVHVVISSDS-LADKNYTEDLSK 861


>BC022062-1|AAH22062.2|  858|Homo sapiens HPS3 protein protein.
          Length = 858

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 274 CHPFGGYICWVHVTLYSDSRRSDKKGTDDCKK 179
           C  +G    WVHV + SDS  +DK  T+D  K
Sbjct: 685 CSHYGLIYPWVHVVISSDS-LADKNYTEDLSK 715


>BC016901-1|AAH16901.1|  372|Homo sapiens HPS3 protein protein.
          Length = 372

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 274 CHPFGGYICWVHVTLYSDSRRSDKKGTDDCKK 179
           C  +G    WVHV + SDS  +DK  T+D  K
Sbjct: 199 CSHYGLIYPWVHVVISSDS-LADKNYTEDLSK 229


>AY033141-1|AAK53457.1| 1004|Homo sapiens Hermansky-Pudlak syndrome
           type-3 protein protein.
          Length = 1004

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 274 CHPFGGYICWVHVTLYSDSRRSDKKGTDDCKK 179
           C  +G    WVHV + SDS  +DK  T+D  K
Sbjct: 831 CSHYGLIYPWVHVVISSDS-LADKNYTEDLSK 861


>AL833878-1|CAD38735.1|  565|Homo sapiens hypothetical protein
           protein.
          Length = 565

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 274 CHPFGGYICWVHVTLYSDSRRSDKKGTDDCKK 179
           C  +G    WVHV + SDS  +DK  T+D  K
Sbjct: 392 CSHYGLIYPWVHVVISSDS-LADKNYTEDLSK 422


>AK056575-1|BAB71221.1|  804|Homo sapiens protein ( Homo sapiens
           cDNA FLJ32013 fis, clone NTONG1000033. ).
          Length = 804

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 274 CHPFGGYICWVHVTLYSDSRRSDKKGTDDCKK 179
           C  +G    WVHV + SDS  +DK  T+D  K
Sbjct: 631 CSHYGLIYPWVHVVISSDS-LADKNYTEDLSK 661


>AF375663-1|AAK84131.1| 1004|Homo sapiens Hermansky-Pudlak
           syndrome-3 protein protein.
          Length = 1004

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 274 CHPFGGYICWVHVTLYSDSRRSDKKGTDDCKK 179
           C  +G    WVHV + SDS  +DK  T+D  K
Sbjct: 831 CSHYGLIYPWVHVVISSDS-LADKNYTEDLSK 861


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,401,036
Number of Sequences: 237096
Number of extensions: 656643
Number of successful extensions: 998
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 76,859,062
effective HSP length: 72
effective length of database: 59,788,150
effective search space used: 1375127450
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)