Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_G12
         (289 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50193-8|AAL11478.2|  394|Caenorhabditis elegans Hypothetical pr...    30   0.31 
U41037-4|AAA82390.1|  218|Caenorhabditis elegans Hypothetical pr...    27   1.6  
Z68215-16|CAD59144.1|  458|Caenorhabditis elegans Hypothetical p...    27   2.2  
Z68160-5|CAA92293.2|  458|Caenorhabditis elegans Hypothetical pr...    27   2.2  
Z73102-13|CAA97405.1|  836|Caenorhabditis elegans Hypothetical p...    25   6.6  
Z81587-12|CAN99727.1|  220|Caenorhabditis elegans Hypothetical p...    25   8.7  
Z81587-11|CAB04705.2|  247|Caenorhabditis elegans Hypothetical p...    25   8.7  
Z81465-4|CAB03866.3|  613|Caenorhabditis elegans Hypothetical pr...    25   8.7  
AL032646-13|CAA21687.3|  613|Caenorhabditis elegans Hypothetical...    25   8.7  

>U50193-8|AAL11478.2|  394|Caenorhabditis elegans Hypothetical
           protein ZK328.6 protein.
          Length = 394

 Score = 29.9 bits (64), Expect = 0.31
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +2

Query: 179 FLAIVGTLFVTTPAIAIQCHVNP 247
           FLAI GTLF     + +Q HVNP
Sbjct: 147 FLAIEGTLFSELQQLTLQVHVNP 169


>U41037-4|AAA82390.1|  218|Caenorhabditis elegans Hypothetical
           protein T24C12.4 protein.
          Length = 218

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +1

Query: 106 FLQRQSI*INRQSICDFNYKNEGFISCNRRYPFCHYACYRYTMSR-EPSKC 255
           FL+++ +    Q  CD +  +  F  C +   FC    YR  + R EP  C
Sbjct: 159 FLKKEDVWGKSQWSCDGSTAHLAFRICRKTCNFCRRDIYRTPLGRFEPVSC 209


>Z68215-16|CAD59144.1|  458|Caenorhabditis elegans Hypothetical
           protein D1046.5 protein.
          Length = 458

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 9/35 (25%), Positives = 21/35 (60%)
 Frame = +2

Query: 173 ALFLAIVGTLFVTTPAIAIQCHVNPANVSSEWVTM 277
           ++ +A++GTL V+ P  A+Q  +    + + W+ +
Sbjct: 180 SILIALLGTLLVSIPHTAVQVIIEMKIIDNSWLPL 214


>Z68160-5|CAA92293.2|  458|Caenorhabditis elegans Hypothetical
           protein D1046.5 protein.
          Length = 458

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 9/35 (25%), Positives = 21/35 (60%)
 Frame = +2

Query: 173 ALFLAIVGTLFVTTPAIAIQCHVNPANVSSEWVTM 277
           ++ +A++GTL V+ P  A+Q  +    + + W+ +
Sbjct: 180 SILIALLGTLLVSIPHTAVQVIIEMKIIDNSWLPL 214


>Z73102-13|CAA97405.1|  836|Caenorhabditis elegans Hypothetical
           protein B0035.12 protein.
          Length = 836

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -2

Query: 108 EENFNKSSLYTHWCRRRLVQLIHITKDTDYSPRAE 4
           EE  +    Y    RRR    IH+T  +DYSP AE
Sbjct: 352 EEGRSLYRTYAFLLRRR----IHLTGSSDYSPMAE 382


>Z81587-12|CAN99727.1|  220|Caenorhabditis elegans Hypothetical
           protein T06G6.6b protein.
          Length = 220

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 211 YACYRYTMSREPSKCILRMGD 273
           YAC R +     S+C+LR G+
Sbjct: 25  YACQRQSSRSSKSECMLRFGE 45


>Z81587-11|CAB04705.2|  247|Caenorhabditis elegans Hypothetical
           protein T06G6.6a protein.
          Length = 247

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 211 YACYRYTMSREPSKCILRMGD 273
           YAC R +     S+C+LR G+
Sbjct: 52  YACQRQSSRSSKSECMLRFGE 72


>Z81465-4|CAB03866.3|  613|Caenorhabditis elegans Hypothetical
           protein Y54E2A.1 protein.
          Length = 613

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 108 EENFNKSSLYTHWCRRR 58
           E N + S    HWCRRR
Sbjct: 214 ETNLSLSGQRVHWCRRR 230


>AL032646-13|CAA21687.3|  613|Caenorhabditis elegans Hypothetical
           protein Y54E2A.1 protein.
          Length = 613

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 108 EENFNKSSLYTHWCRRR 58
           E N + S    HWCRRR
Sbjct: 214 ETNLSLSGQRVHWCRRR 230


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,463,571
Number of Sequences: 27780
Number of extensions: 106088
Number of successful extensions: 198
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 269889950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)