Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_G09
(256 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 130 4e-32
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 129 5e-32
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 129 5e-32
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 93 7e-21
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 82 1e-17
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 70 4e-14
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 32 0.011
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 30 0.056
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.074
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 29 0.074
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 27 0.40
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 0.52
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 27 0.52
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 27 0.52
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 25 1.2
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 25 1.2
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 25 1.2
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 25 1.6
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 25 2.1
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 25 2.1
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc... 24 2.8
SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated |Schizosaccharom... 24 3.7
SPAC1565.07c |||TATA binding protein interacting protein |Schizo... 23 4.9
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 23 4.9
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ... 23 6.4
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe... 23 6.4
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 23 8.5
SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz... 23 8.5
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 23 8.5
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 130 bits (313), Expect = 4e-32
Identities = 59/70 (84%), Positives = 67/70 (95%)
Frame = +1
Query: 25 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 204
+IDAPGHRDFIKNMITGTSQADCAVLI+ GTGEFEAGISK+GQTREHALLA+TLGVKQL
Sbjct: 89 VIDAPGHRDFIKNMITGTSQADCAVLIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQL 148
Query: 205 IVGLSKMDSS 234
IV ++KMD++
Sbjct: 149 IVAVNKMDTT 158
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 129 bits (312), Expect = 5e-32
Identities = 58/70 (82%), Positives = 67/70 (95%)
Frame = +1
Query: 25 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 204
+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+GQTREHALLA+TLGVKQL
Sbjct: 89 VIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQL 148
Query: 205 IVGLSKMDSS 234
IV ++KMD++
Sbjct: 149 IVAVNKMDTT 158
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 129 bits (312), Expect = 5e-32
Identities = 58/70 (82%), Positives = 67/70 (95%)
Frame = +1
Query: 25 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 204
+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+GQTREHALLA+TLGVKQL
Sbjct: 89 VIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQL 148
Query: 205 IVGLSKMDSS 234
IV ++KMD++
Sbjct: 149 IVAVNKMDTT 158
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 92.7 bits (220), Expect = 7e-21
Identities = 40/76 (52%), Positives = 55/76 (72%)
Frame = +1
Query: 25 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 204
++DAPGH+ ++ NMI G SQAD VL+++A GEFEAG + GQTREHA+LA T G+ L
Sbjct: 320 LLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHL 379
Query: 205 IVGLSKMDSSEPPYSE 252
+V ++KMD +SE
Sbjct: 380 VVVINKMDEPSVQWSE 395
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 81.8 bits (193), Expect = 1e-17
Identities = 36/66 (54%), Positives = 46/66 (69%)
Frame = +1
Query: 31 DAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIV 210
DAPGHRDFI MI G S AD AVL+V + FE G +NGQTREHA L LG+ +++V
Sbjct: 261 DAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVV 320
Query: 211 GLSKMD 228
++K+D
Sbjct: 321 SVNKLD 326
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 70.1 bits (164), Expect = 4e-14
Identities = 35/75 (46%), Positives = 49/75 (65%)
Frame = +1
Query: 28 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 207
+D PGH D+IKNMITG + D A+++V+A G+ QTREH LLA +GVKQ++
Sbjct: 121 VDCPGHADYIKNMITGAATMDGAIIVVSATDGQMP-------QTREHLLLARQVGVKQIV 173
Query: 208 VGLSKMDSSEPPYSE 252
V ++K+D EP E
Sbjct: 174 VYINKVDMVEPDMIE 188
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 32.3 bits (70), Expect = 0.011
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = +1
Query: 28 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 207
+D PGH + M+ G + D A+L++A QT EH + +K +I
Sbjct: 113 VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQLKHII 166
Query: 208 VGLSKMD 228
+ +K+D
Sbjct: 167 ILQNKVD 173
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 29.9 bits (64), Expect = 0.056
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +1
Query: 25 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 168
IID PGH DF + D AVL++ A +G I+ + Q R +
Sbjct: 149 IIDTPGHIDFTIEVERALRVLDGAVLVLCAVSGVQSQTITVDRQMRRY 196
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.5 bits (63), Expect = 0.074
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 25 IIDAPGHRDFIKNMITGTSQADCAVLIV 108
IID PGH F GTS + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 29.5 bits (63), Expect = 0.074
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +1
Query: 7 RNSARGIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 123
RN +ID PGH DF + + D AV I+ G
Sbjct: 91 RNQRINLIDTPGHADFTFEVERSVAVLDGAVAIIDGSAG 129
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 27.1 bits (57), Expect = 0.40
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 28 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 123
+D PGH F G + AD VL+VA G
Sbjct: 225 LDTPGHMAFEAMRKRGANIADIVVLVVAGDDG 256
Score = 23.0 bits (47), Expect = 6.4
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -3
Query: 122 PVPAATISTAQSA*DVPVIMFLMKSLCPG 36
P I QSA DVPV++ L KS PG
Sbjct: 259 PQTVEAIKHIQSA-DVPVVVALTKSDRPG 286
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 26.6 bits (56), Expect = 0.52
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 28 IDAPGHRDFIKNMITGTSQADCAVLIV 108
ID PGH DF+ + + +D VL+V
Sbjct: 214 IDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 26.6 bits (56), Expect = 0.52
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 25 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 123
+ID PGH DF ++ + + +L+V A G
Sbjct: 128 LIDTPGHVDFRAEVMHSLAACEGCILLVDASQG 160
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 26.6 bits (56), Expect = 0.52
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 25 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 123
+ID+PGH DF + + + D A ++V A G
Sbjct: 98 LIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 25.4 bits (53), Expect = 1.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 25 IIDAPGHRDFIKNMITGTSQADCAVLIV 108
+ID+PGH DF + D A+++V
Sbjct: 102 LIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 25.4 bits (53), Expect = 1.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 25 IIDAPGHRDFIKNMITGTSQADCAVLIV 108
+ID+PGH DF + D A+++V
Sbjct: 102 LIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1385
Score = 25.4 bits (53), Expect = 1.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 129 EFTSTSGDNKHGAVSLRRSSDHVLDE 52
+F S+ + K+G + SSD VLDE
Sbjct: 1234 DFVSSKRNGKNGGSFIEESSDTVLDE 1259
>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 992
Score = 25.0 bits (52), Expect = 1.6
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -3
Query: 254 DSLYGGSLESILLNPTISCLTPSVKASRACSRVCPFFEIP-ASNSPVPAATIST 96
DSL S E NPT+S T S + + PF++ P +N+P +ST
Sbjct: 81 DSLNAPS-ELTSKNPTVSSTTSSANPAIVSNGGSPFYKNPVVANNPSSTFDMST 133
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 24.6 bits (51), Expect = 2.1
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 114 WYW*IRSRYLKERTNA*TRSARFHTRSQATDCRIE 218
W + +RYL + + T S+ F T ++ATD ++
Sbjct: 470 WVTEVFTRYLGDDSTPVTSSSIFSTATEATDTSVQ 504
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 24.6 bits (51), Expect = 2.1
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = +1
Query: 88 DCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGLSKMDSSE 237
D L V+ G +NGQ EH+L LGV +I L DS E
Sbjct: 581 DGGTLYVSTNNGYVLMFNFQNGQVIEHSLRRNQLGVAPII--LKHFDSKE 628
>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 381
Score = 24.2 bits (50), Expect = 2.8
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +3
Query: 39 WTQRFHQEHDHWN 77
W Q F Q+H +WN
Sbjct: 258 WQQSFLQDHGYWN 270
>SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 351
Score = 23.8 bits (49), Expect = 3.7
Identities = 9/43 (20%), Positives = 22/43 (51%)
Frame = -2
Query: 255 RLTVWWLTGVHFAQSYNQLLDSECESEQSVFTRLSVL*DTGFE 127
R W+ H + + +D++C Q+ F ++++L + F+
Sbjct: 246 RCNTWFYLSKHMKKVASANMDAQCFYVQNSFYKITILYEIKFD 288
>SPAC1565.07c |||TATA binding protein interacting protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 23.4 bits (48), Expect = 4.9
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 20 EASSTLLDTEISSRT*SLERLKLTAPCLLSPLVLVNSK 133
++ + L+DT IS S L + CLLS ++ V SK
Sbjct: 738 KSKNLLIDTIISHLQSSTIHLNEESVCLLSRIIAVISK 775
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 23.4 bits (48), Expect = 4.9
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = -2
Query: 141 DTGFEFTSTSGDNKHGAVSLRRSSDHVLDEISVSRSVDDASCRIP 7
D F+ G+N+ + + D +DE + R+ + AS R P
Sbjct: 95 DFSFDEEGEEGNNEFNTLRPNKYQDADVDEFNTIRASETASQRPP 139
>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 23.0 bits (47), Expect = 6.4
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 135 RYLKERTNA*TRSARFHTRSQATDCRIEQ 221
R++ E+ T+SAR +S +C +EQ
Sbjct: 109 RHVLEKNQITTKSARQFVKSHLGNCDLEQ 137
>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 23.0 bits (47), Expect = 6.4
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -3
Query: 176 SRACSRVCPFFEIPASNSPVP 114
S +C+R+ P +P S P P
Sbjct: 605 SLSCARIRPLVMVPKSKKPSP 625
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 22.6 bits (46), Expect = 8.5
Identities = 16/71 (22%), Positives = 31/71 (43%)
Frame = -2
Query: 237 LTGVHFAQSYNQLLDSECESEQSVFTRLSVL*DTGFEFTSTSGDNKHGAVSLRRSSDHVL 58
++ VH NQ++ + ES+ S+ + +S+ + F T T D L
Sbjct: 1769 ISSVHHRSPINQVVRNLNESQLSLDSVISMNLNKEFALTKTENDFTDDNGRALNYFSQKL 1828
Query: 57 DEISVSRSVDD 25
+E+ SV++
Sbjct: 1829 EELDPKNSVNE 1839
>SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 451
Score = 22.6 bits (46), Expect = 8.5
Identities = 9/27 (33%), Positives = 12/27 (44%)
Frame = +1
Query: 73 GTSQADCAVLIVAAGTGEFEAGISKNG 153
G+ DC + A F AGI +G
Sbjct: 344 GSKHTDCIITSSEAAANRFMAGIDASG 370
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 22.6 bits (46), Expect = 8.5
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -3
Query: 230 ESILLNPTISCLTPSV 183
+S+LLNP + TPS+
Sbjct: 169 QSVLLNPNLRARTPSL 184
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.133 0.385
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,020,334
Number of Sequences: 5004
Number of extensions: 16173
Number of successful extensions: 81
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 49493712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -