Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_G08
         (202 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces pomb...    33   0.004
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p...    24   2.4  
SPCC306.02c |||Rab GTPase binding |Schizosaccharomyces pombe|chr...    24   2.4  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    23   4.2  
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    22   9.7  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    22   9.7  
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    22   9.7  

>SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 436

 Score = 33.5 bits (73), Expect = 0.004
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 103 WLLVLLSFVSSGQALDNGLALTPPMGWLTWERY 201
           +L+ L  F S      NGL L P MGW +W +Y
Sbjct: 11  FLVFLFLFFSDVHGSYNGLGLKPQMGWNSWNKY 43


>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 446

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 7/28 (25%), Positives = 14/28 (50%)
 Frame = +3

Query: 96  EDVVISPIILCVIGTSIGQWTRLNTSNG 179
           + +++  I++CV  +  G W    T  G
Sbjct: 71  QSIILPEILICVQSSPCGSWLAAGTEKG 98


>SPCC306.02c |||Rab GTPase binding |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 171

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +3

Query: 33  VSFRFAFSSIVFMCSY*YAIVEDVVISPIILCVIGTSIG 149
           +SF F+  S  ++      ++  ++ +P++L VIG  +G
Sbjct: 54  ISFNFSRFSSNYLAIIAMLVIYALIRNPLLLIVIGIGVG 92


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 158 SPLSNACPDDTKDNRTNNHIFDDS 87
           +P+ N   D  + N  N H+ DDS
Sbjct: 272 NPVHNTSSDSQRLNHQNRHLPDDS 295


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 161 ASPLSNACPDDTKDNRTNN 105
           A+PLS   P DTK ++  N
Sbjct: 605 ATPLSKPQPKDTKGSKLGN 623


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 8/30 (26%), Positives = 14/30 (46%)
 Frame = -3

Query: 185 SQPIGGVKASPLSNACPDDTKDNRTNNHIF 96
           S+P+ G +     N       D++ N H+F
Sbjct: 347 SEPVAGKENETAKNESGASDNDHKANVHVF 376


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -3

Query: 128 TKDNRTNNHIFD 93
           ++DNR N H+FD
Sbjct: 255 SRDNRPNYHLFD 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 831,781
Number of Sequences: 5004
Number of extensions: 12539
Number of successful extensions: 30
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 46
effective length of database: 2,132,294
effective search space used: 42645880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)