Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_G08
(202 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1689 + 28710936-28711129,28711283-28711341,28711858-287118... 33 0.042
10_08_0478 + 18192636-18192784,18192991-18193052,18193381-181934... 32 0.073
07_03_0230 + 15526504-15526673,15526809-15526867,15527135-155271... 32 0.073
10_08_0482 + 18218163-18218362,18220388-18220446,18223027-182230... 31 0.17
01_05_0626 + 23797278-23797618,23797629-23798097 30 0.30
09_06_0251 - 21859484-21862162 28 0.90
01_03_0233 + 14042548-14044950 28 1.2
07_01_0449 - 3392512-3393504 27 1.6
02_02_0412 - 9950286-9950380,9950530-9951203,9951402-9951580,995... 27 1.6
01_05_0293 - 20532559-20532572,20532573-20532798,20532926-205339... 26 3.6
02_01_0477 + 3431509-3431551,3432243-3432319,3432417-3432542,343... 26 4.8
02_05_0601 - 30278455-30278572,30280211-30280676,30280748-302809... 25 6.4
06_01_0449 - 3176135-3176329,3176531-3177289,3177420-3177905,317... 25 8.4
01_06_1071 - 34289609-34292941 25 8.4
01_05_0241 + 19815996-19816823 25 8.4
>07_03_1689 +
28710936-28711129,28711283-28711341,28711858-28711892,
28712123-28712226,28712325-28712397,28712495-28712553,
28712656-28712721,28712815-28712898,28712995-28713059,
28713152-28713342,28713522-28713612,28714076-28714134,
28714732-28714872,28715214-28715321
Length = 442
Score = 32.7 bits (71), Expect = 0.042
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +1
Query: 145 LDNGLALTPPMGWLTW 192
L+NGLALTP MGW +W
Sbjct: 54 LNNGLALTPQMGWNSW 69
>10_08_0478 +
18192636-18192784,18192991-18193052,18193381-18193437,
18193771-18193805,18193940-18194043,18194238-18194313,
18194469-18194527,18194879-18194962,18195065-18195129,
18195241-18195323,18195670-18195760,18195847-18196157
Length = 391
Score = 31.9 bits (69), Expect = 0.073
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +1
Query: 145 LDNGLALTPPMGWLTWERY 201
L NGLA PPMGW +W +
Sbjct: 39 LANGLATAPPMGWNSWNHF 57
>07_03_0230 +
15526504-15526673,15526809-15526867,15527135-15527139,
15528165-15528268,15528362-15528437,15528646-15528704,
15528803-15528868,15529372-15529455,15529608-15529672,
15529758-15529840,15529949-15530039,15530142-15530194,
15530285-15530428,15530562-15530675
Length = 390
Score = 31.9 bits (69), Expect = 0.073
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +1
Query: 145 LDNGLALTPPMGWLTWERY 201
LDNGL TP MGW +W +
Sbjct: 46 LDNGLGRTPQMGWNSWNHF 64
>10_08_0482 +
18218163-18218362,18220388-18220446,18223027-18223083,
18223245-18223279,18223617-18223720,18223870-18223945,
18224045-18224103,18224183-18224248,18224338-18224421,
18224503-18224567,18224658-18224740,18224832-18224903,
18225166-18225306,18225395-18225456,18225539-18225605,
18225863-18226075
Length = 480
Score = 30.7 bits (66), Expect = 0.17
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 139 QALDNGLALTPPMGWLTWERY 201
+A +NGL TP MGW +W +
Sbjct: 54 RAFENGLGRTPQMGWNSWNHF 74
>01_05_0626 + 23797278-23797618,23797629-23798097
Length = 269
Score = 29.9 bits (64), Expect = 0.30
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 51 FSSIVFMCSY*YAIVEDVVISPIILCVIGTSIGQWTRLNTSNGL 182
FS + CS+ +D V P I+CV+GT++ W R G+
Sbjct: 199 FSEVQQGCSFAVGETKDDV--PCIVCVVGTTVSVWMRKFDEKGV 240
>09_06_0251 - 21859484-21862162
Length = 892
Score = 28.3 bits (60), Expect = 0.90
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -3
Query: 200 YLSQVSQPIGGVKASPLSNACPDDTKDNRTNNHIFDDSVLITTHK 66
Y++ S+ G SP+S CPD D N DS+L+ H+
Sbjct: 241 YITDYSECTLGTDESPVSGVCPDKVYDEGKN-----DSLLVYGHR 280
>01_03_0233 + 14042548-14044950
Length = 800
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -1
Query: 178 PLEVLRRVHCPMLVPMTQRIIGLITTSS 95
PL VLRRV +L +++RI+GL S
Sbjct: 648 PLPVLRRVLVAVLAHISERIVGLFLNDS 675
>07_01_0449 - 3392512-3393504
Length = 330
Score = 27.5 bits (58), Expect = 1.6
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 173 GGVKASPLSNACPDDTKDNRTNN 105
GGV+ +P ACPDD NR N
Sbjct: 197 GGVERTPSEAACPDDAFLNRDLN 219
>02_02_0412 -
9950286-9950380,9950530-9951203,9951402-9951580,
9952578-9952633,9953233-9953262,9953820-9953982
Length = 398
Score = 27.5 bits (58), Expect = 1.6
Identities = 17/66 (25%), Positives = 31/66 (46%)
Frame = -3
Query: 200 YLSQVSQPIGGVKASPLSNACPDDTKDNRTNNHIFDDSVLITTHKYN*AKRKTERHVYRL 21
Y++ S GG+ +P + P D + +FD + ++ H Y + E+H+ R
Sbjct: 101 YMAMYSSIFGGITTNPSAMVIPIDDHMVHRGHGVFDTAAIMNGHLY-----ELEQHLDRF 155
Query: 20 VPKSCS 3
+ KS S
Sbjct: 156 L-KSAS 160
>01_05_0293 -
20532559-20532572,20532573-20532798,20532926-20533960,
20534670-20534996
Length = 533
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = -3
Query: 137 PDDTK-DNRTNNHIFDDSVLITTH 69
PD T+ DN +NH+FDD V H
Sbjct: 105 PDPTQVDNLDDNHLFDDMVQEMEH 128
>02_01_0477 +
3431509-3431551,3432243-3432319,3432417-3432542,
3432638-3432715,3432797-3432952,3433044-3433140,
3433595-3433817,3440445-3440760,3440895-3441390,
3441485-3441651
Length = 592
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/62 (20%), Positives = 25/62 (40%)
Frame = -3
Query: 197 LSQVSQPIGGVKASPLSNACPDDTKDNRTNNHIFDDSVLITTHKYN*AKRKTERHVYRLV 18
++ Q + G +N + ++N T ++ DD + TH Y +K + R
Sbjct: 155 INNTHQVVNGSTPEVENNVSASELENNGTTSNNQDDEDIAITHTYRTISKKRNNEITRYT 214
Query: 17 PK 12
K
Sbjct: 215 YK 216
>02_05_0601 -
30278455-30278572,30280211-30280676,30280748-30280951,
30281065-30281220,30281336-30281738
Length = 448
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +1
Query: 61 LYLCVVINTLSSKMWLLVLLSFVSSGQALDNGL 159
L LCVV+N + + ++++ V SG++ G+
Sbjct: 115 LQLCVVVNNVGVMVVYMIIIGDVLSGKSSSGGV 147
>06_01_0449 -
3176135-3176329,3176531-3177289,3177420-3177905,
3178302-3178421,3178637-3178703,3178784-3179007,
3179149-3179234,3179936-3180509
Length = 836
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 90 IVEDVVISPIILCVIGTSIGQWTRLN 167
IVED + + VI TS+G+W L+
Sbjct: 684 IVEDAMEKGDLNSVIDTSVGEWPHLH 709
>01_06_1071 - 34289609-34292941
Length = 1110
Score = 25.0 bits (52), Expect = 8.4
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Frame = -1
Query: 178 PLEVLRRVH---CPMLVPMTQRIIGLITTS 98
PL LR +H CP LVP T GL+ TS
Sbjct: 942 PLISLRSLHIYECPCLVPWTALEGGLLPTS 971
>01_05_0241 + 19815996-19816823
Length = 275
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 197 LSQVSQPIGGVKASPLSNACPDDT 126
+ + +P G +K PLS+A PD T
Sbjct: 242 IKKTPKPDGAIKIIPLSSAKPDKT 265
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,434,202
Number of Sequences: 37544
Number of extensions: 79741
Number of successful extensions: 191
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 14,793,348
effective HSP length: 46
effective length of database: 13,066,324
effective search space used: 261326480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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