Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_G05
(272 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa... 130 3e-32
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac... 130 3e-32
SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyce... 29 0.089
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 27 0.36
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 0.36
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ... 25 1.9
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 25 1.9
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||... 25 1.9
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 24 3.4
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 24 3.4
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 24 4.4
SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe... 24 4.4
SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73 family... 23 5.9
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 23 5.9
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 23 5.9
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha... 23 5.9
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 23 5.9
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo... 23 5.9
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 23 5.9
SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|ch... 23 7.8
SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ... 23 7.8
>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
L19B|Schizosaccharomyces pombe|chr 3|||Manual
Length = 193
Score = 130 bits (315), Expect = 3e-32
Identities = 56/83 (67%), Positives = 73/83 (87%)
Frame = +2
Query: 23 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 202
M++L+ QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQNIRK++KDGLVI+KP +HSR
Sbjct: 1 MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSR 60
Query: 203 ARVRKNTEARRKGRHCGFGKRRG 271
R+RK A+R GRH G+GKR+G
Sbjct: 61 FRIRKTHAAKRLGRHTGYGKRKG 83
>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
L19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 193
Score = 130 bits (315), Expect = 3e-32
Identities = 56/83 (67%), Positives = 73/83 (87%)
Frame = +2
Query: 23 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 202
M++L+ QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQN+RK+IKDGLVI+KP +HSR
Sbjct: 1 MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSR 60
Query: 203 ARVRKNTEARRKGRHCGFGKRRG 271
R+RK A+R GRH G+GKR+G
Sbjct: 61 FRIRKTHAAKRLGRHTGYGKRKG 83
>SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 29.5 bits (63), Expect = 0.089
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -3
Query: 225 SVFLRTRAREWTATGFLMTRPSLIILRMFC 136
S F T REWT L T +++R FC
Sbjct: 85 STFWETMGREWTGIDILRTDKFYLLMRRFC 114
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 27.5 bits (58), Expect = 0.36
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -2
Query: 265 PLTKATVTSFP-ARLCVFANTSAGMDSNWFLDDQTILDHLTD 143
P A + SF +R CV N + NW+ + I HLTD
Sbjct: 121 PFQIARIISFEKSRPCVSTNLYDSVRLNWYFRPRDIQRHLTD 162
>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 27.5 bits (58), Expect = 0.36
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -2
Query: 145 DVLSGISISDFIDLVWIKPHLFFTASHNRGCK 50
+VLS + +D + PHL +S N+ CK
Sbjct: 237 EVLSKLPYFHILDKSFFSPHLLLQSSENQACK 268
>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 444
Score = 25.0 bits (52), Expect = 1.9
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 11/65 (16%)
Frame = +2
Query: 83 KVWLDPNEINEIANTNSRQNIRKMIKDGLVIKK-----------PVAVHSRARVRKNTEA 229
K WLDP ++++ T + +++++ I ++K+ P + A KN EA
Sbjct: 289 KSWLDPVVVSKVKFTRNYRDLQQYINPDNILKEFGGPNPWRYTYPEPCQNEAEALKNVEA 348
Query: 230 RRKGR 244
R+ R
Sbjct: 349 RKSLR 353
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.0 bits (52), Expect = 1.9
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +2
Query: 137 QNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 253
+++R +KD + +PV+V S A ++T G G
Sbjct: 141 ESLRSKLKDAMASTEPVSVDSAAAPSQSTNPEGNGGSVG 179
>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 600
Score = 25.0 bits (52), Expect = 1.9
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +2
Query: 26 SSLKLQKRLAASVMRCGKK--KVWLDPNEINEIANTNSRQNIRK 151
S + + K L S MRCG+K W++ + + NT+ + K
Sbjct: 317 SYISVIKALEHSAMRCGRKLDLQWVEASHLEASTNTSDPLSYHK 360
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 24.2 bits (50), Expect = 3.4
Identities = 8/33 (24%), Positives = 20/33 (60%)
Frame = +2
Query: 125 TNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNT 223
T S ++ +IK+ +KP ++++++KN+
Sbjct: 912 TESLNQVKNLIKNDTSNRKPFGAENQSKLKKNS 944
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 24.2 bits (50), Expect = 3.4
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +2
Query: 35 KLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDG 166
+L +RLAA + RC ++ W D + NI+K+I DG
Sbjct: 1113 QLAERLAARLDRCKTQRQW-DHVVYALSLLPHKADNIQKLIDDG 1155
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 23.8 bits (49), Expect = 4.4
Identities = 6/11 (54%), Positives = 9/11 (81%)
Frame = -1
Query: 233 CAPLCFCEHER 201
C P+CFC +E+
Sbjct: 1236 CCPVCFCPYEK 1246
>SPBC23G7.07c |||replication regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 277
Score = 23.8 bits (49), Expect = 4.4
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -2
Query: 178 LDDQTILDHLTDVLSGISISD 116
LDDQ LD+ D++S IS+SD
Sbjct: 11 LDDQ--LDYQVDLVSEISVSD 29
>SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 371
Score = 23.4 bits (48), Expect = 5.9
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -2
Query: 187 NWFLDDQTILDHLTDVLSGISISDFIDL 104
NW ++ + + VL GI DFI L
Sbjct: 146 NWLFENTRTVSNHNSVLHGIKPIDFISL 173
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 23.4 bits (48), Expect = 5.9
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3
Query: 129 LVLAISLISFGSSHTFF 79
L+L++ LISFG TFF
Sbjct: 276 LILSLFLISFGYFFTFF 292
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 23.4 bits (48), Expect = 5.9
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3
Query: 129 LVLAISLISFGSSHTFF 79
L+L++ LISFG TFF
Sbjct: 276 LILSLFLISFGYFFTFF 292
>SPCC777.09c |arg1||acetylornithine
aminotransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 441
Score = 23.4 bits (48), Expect = 5.9
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 39 YRRGLQPLLCDAVK 80
Y+RG QPLL D V+
Sbjct: 194 YKRGFQPLLPDVVQ 207
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 23.4 bits (48), Expect = 5.9
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3
Query: 129 LVLAISLISFGSSHTFF 79
L+L++ LISFG TFF
Sbjct: 276 LILSLFLISFGYFFTFF 292
>SPBC215.01 ||SPBC3B9.20|GTPase activating
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 23.4 bits (48), Expect = 5.9
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 135 LELVLAISLISFGSSHTFFLPHRITE 58
+ +V A LI TFFL H+I E
Sbjct: 308 MNIVAAALLIHCTEEQTFFLMHKICE 333
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 23.4 bits (48), Expect = 5.9
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3
Query: 129 LVLAISLISFGSSHTFF 79
L+L++ LISFG TFF
Sbjct: 276 LILSLFLISFGYFFTFF 292
>SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 245
Score = 23.0 bits (47), Expect = 7.8
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +2
Query: 35 KLQKRLAASVMRCGKKKVWLDPNEINEI 118
K K L +S+ W D NE+NE+
Sbjct: 19 KNTKSLQSSLESAENDPFWTDANELNEL 46
>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 496
Score = 23.0 bits (47), Expect = 7.8
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -2
Query: 169 QTILDHLTDVLSGISISDFIDLVWIKPHLFFTASHNRGC 53
+TI+DHL D L ++IS + V + L+ R C
Sbjct: 405 ETIIDHLYDSLRLLAISVTMKYVRNQTILYVNLHDKRKC 443
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,161,053
Number of Sequences: 5004
Number of extensions: 20043
Number of successful extensions: 76
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 59659786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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