Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_G02
         (306 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4SBB3 Cluster: Chromosome undetermined SCAF14676, whol...    31   5.0  
UniRef50_A2ZLL8 Cluster: Lipoxygenase; n=8; Oryza sativa|Rep: Li...    31   5.0  
UniRef50_Q6IK06 Cluster: HDC13888; n=1; Drosophila melanogaster|...    31   6.7  
UniRef50_Q64P65 Cluster: Putative transcriptional regulator; n=2...    30   8.8  
UniRef50_A2FY49 Cluster: Zinc finger, C2H2 type family protein; ...    30   8.8  
UniRef50_Q6FII8 Cluster: Similarities with sp|P38894 Saccharomyc...    30   8.8  

>UniRef50_Q4SBB3 Cluster: Chromosome undetermined SCAF14676, whole
           genome shotgun sequence; n=3; Tetraodontidae|Rep:
           Chromosome undetermined SCAF14676, whole genome shotgun
           sequence - Tetraodon nigroviridis (Green puffer)
          Length = 298

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 16/25 (64%), Positives = 17/25 (68%)
 Frame = -1

Query: 291 FDQNLGCCLMMMWSRMVNSLSLEVL 217
           FDQ+ G  LM M S  VNSLSLE L
Sbjct: 52  FDQSTGVALMSMQSPPVNSLSLEFL 76


>UniRef50_A2ZLL8 Cluster: Lipoxygenase; n=8; Oryza sativa|Rep:
           Lipoxygenase - Oryza sativa subsp. indica (Rice)
          Length = 880

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = -1

Query: 195 NTPIGTWRQVFEPG---SGSWPGRPTTMLWLPHDIFYHRKLRLILELYMWVRTH 43
           NTP   WRQVF PG   + SW  +      L HD  YH+ +        W+RTH
Sbjct: 494 NTP--QWRQVFTPGTSVAASWLWQLAKTHVLAHDTGYHQLVS------HWLRTH 539


>UniRef50_Q6IK06 Cluster: HDC13888; n=1; Drosophila
           melanogaster|Rep: HDC13888 - Drosophila melanogaster
           (Fruit fly)
          Length = 317

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = -1

Query: 195 NTPIGTWRQVFEPGSGSWPGRPTTMLWLPHDIFYHRKLRLILELYMWVRTHVHR 34
           +T +GTW+ VF   S S       + W  H + YH     +L + + +R  VH+
Sbjct: 258 STGVGTWQSVFPHRSTS---ALRAIRWDHHCLLYHHNTNCLLTVTVCLRLRVHQ 308


>UniRef50_Q64P65 Cluster: Putative transcriptional regulator; n=2;
           Bacteroides fragilis|Rep: Putative transcriptional
           regulator - Bacteroides fragilis
          Length = 730

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -2

Query: 158 LGAVAGQAVLPLCYGCLTIFSTTEN 84
           L  V   A+LPLC G L +FS TEN
Sbjct: 304 LAGVRKIALLPLCIGVLALFSFTEN 328


>UniRef50_A2FY49 Cluster: Zinc finger, C2H2 type family protein;
           n=1; Trichomonas vaginalis G3|Rep: Zinc finger, C2H2
           type family protein - Trichomonas vaginalis G3
          Length = 366

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = -1

Query: 183 GTWRQVFE---PGSGSWPGRPTTMLWLPHDIFYHRKL 82
           GTW Q  +      G  PGRP  ++++PH + Y +KL
Sbjct: 137 GTWHQYLQWLFEVHGFNPGRPANLVYIPHLVNYLQKL 173


>UniRef50_Q6FII8 Cluster: Similarities with sp|P38894 Saccharomyces
           cerevisiae YHR211w FLO5; n=1; Candida glabrata|Rep:
           Similarities with sp|P38894 Saccharomyces cerevisiae
           YHR211w FLO5 - Candida glabrata (Yeast) (Torulopsis
           glabrata)
          Length = 866

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +3

Query: 234 VSLPSWTTSSLNNSQDFGQNIV 299
           +S+P  TTSS  NS+D+G+ I+
Sbjct: 277 ISIPDPTTSSFTNSKDYGEEII 298


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 357,728,551
Number of Sequences: 1657284
Number of extensions: 7088093
Number of successful extensions: 14395
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14390
length of database: 575,637,011
effective HSP length: 78
effective length of database: 446,368,859
effective search space used: 10266483757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)