Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_G02
         (306 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    25   3.3  
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar...    24   4.4  
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    24   5.8  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    24   5.8  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    23   7.7  

>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -1

Query: 303 YRLCFDQNLGCCLMMMWSRMVN 238
           Y + F Q L  CL   W R +N
Sbjct: 515 YTVTFSQQLWYCLARSWERYIN 536


>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 524

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
 Frame = -1

Query: 276 GCCLMMMWSRMVNSLSLEVLVLKLC*RNTPIGTWRQVFE-PGSGSWPGRPTTML 118
           GC   +  S        EV V   C R T +G W+ +   P SG     P T++
Sbjct: 460 GCINSLSLSLQGKGKQSEVRVFAACGRETRVGRWKTLRGIPNSGFVFNIPLTVI 513


>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 139 WPATAPRFKNLSPSTNRCVPLA 204
           W A AP ++NL+ ++N   P+A
Sbjct: 176 WRALAPIYRNLAYASNTIDPIA 197


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 214 SKVMLKEHTYWYLATGF 164
           S V+  +H YW+L++GF
Sbjct: 486 SLVVKLKHKYWHLSSGF 502


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 20  GRITRLWTWVRTHMYNSKISLSF 88
           G  TR+W WV T+  + +   SF
Sbjct: 657 GEWTRVWEWVGTNTLDFQTDRSF 679


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,437,108
Number of Sequences: 5004
Number of extensions: 28469
Number of successful extensions: 53
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)