Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_G02
(306 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0763 + 22953749-22953884,22955036-22955199,22955695-229563... 32 0.077
12_02_0760 - 22888636-22889407,22889503-22889769,22890001-228903... 32 0.077
01_06_1397 - 37017468-37017561,37017763-37017836,37019128-370191... 27 2.2
07_03_0089 - 13300902-13301645 27 3.8
11_06_0207 + 21214631-21216121 26 5.1
01_04_0030 - 15263341-15263801,15264631-15264679,15264783-15264932 26 5.1
04_04_1013 + 30109321-30110790 26 6.7
04_04_1006 + 30048618-30050087 26 6.7
02_04_0440 + 22954950-22955213,22955317-22956621,22956791-22957522 26 6.7
02_04_0179 + 20682852-20684510,20684593-20684661,20684741-206848... 26 6.7
01_06_0644 + 30821811-30821855,30822707-30822976,30823079-308243... 26 6.7
01_05_0195 - 19111983-19112477,19112646-19113950,19114053-191143... 26 6.7
05_06_0248 + 26673107-26674351 25 8.9
04_01_0554 - 7139623-7140390 25 8.9
>12_02_0763 +
22953749-22953884,22955036-22955199,22955695-22956307,
22968553-22968874,22969107-22969373,22969692-22970460
Length = 756
Score = 32.3 bits (70), Expect = 0.077
Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Frame = -1
Query: 195 NTPIGTWRQVFEPGS---GSWPGRPTTMLWLPHDIFYHRKLRLILELYMWVRTH 43
NTP WRQVF PGS SW + L HD YH+ + W+RTH
Sbjct: 371 NTP--QWRQVFTPGSSVAASWLWQLAKTHVLAHDTGYHQLVS------HWLRTH 416
>12_02_0760 -
22888636-22889407,22889503-22889769,22890001-22890302,
22890402-22890512,22890990-22891568,22892026-22892087,
22892434-22892754,22893434-22893776
Length = 918
Score = 32.3 bits (70), Expect = 0.077
Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Frame = -1
Query: 195 NTPIGTWRQVFEPGS---GSWPGRPTTMLWLPHDIFYHRKLRLILELYMWVRTH 43
NTP WRQVF PGS SW + L HD YH+ + W+RTH
Sbjct: 532 NTP--QWRQVFTPGSSVAASWLWQLAKTHVLAHDTGYHQLVS------HWLRTH 577
>01_06_1397 -
37017468-37017561,37017763-37017836,37019128-37019193,
37019543-37019623,37019735-37019943,37020096-37020192,
37020497-37020514,37020597-37020727,37021040-37021088,
37021450-37021539,37021616-37021721,37021815-37021885,
37021963-37022037,37022059-37022120,37022677-37022887,
37023599-37024069,37024387-37024719
Length = 745
Score = 27.5 bits (58), Expect = 2.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 127 GRTAWPATAPRFKNLSPSTNRCVPLA 204
G +P+ R +LSP++ RC PLA
Sbjct: 49 GSLPFPSNEIRISHLSPTSERCPPLA 74
>07_03_0089 - 13300902-13301645
Length = 247
Score = 26.6 bits (56), Expect = 3.8
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -3
Query: 130 YHYAMVASRYFLPPKTQANFRVVHVGSNPRP*TRNPAALPT 8
+H A+ + P AN RV+ S+P+P NP PT
Sbjct: 9 FHLALAIALAANVPDHIANGRVIEAKSDPKPADPNPKPDPT 49
>11_06_0207 + 21214631-21216121
Length = 496
Score = 26.2 bits (55), Expect = 5.1
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = +2
Query: 116 HSIVVGRPGQLPLPGSKTCRQVPIGVFL*HNFRTSTSRLSEFTILDHIIIKQ 271
+S+V R +L LPG+ +++PIG H + + LSE +++ I +Q
Sbjct: 121 YSLVEKRAFRLTLPGTPLHKRLPIGSS--HGWVVTADELSELHLVNPITGQQ 170
>01_04_0030 - 15263341-15263801,15264631-15264679,15264783-15264932
Length = 219
Score = 26.2 bits (55), Expect = 5.1
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 35 LWTWVRTHMYNSKIS 79
+WT V TH YNS IS
Sbjct: 100 VWTEVETHQYNSAIS 114
>04_04_1013 + 30109321-30110790
Length = 489
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 129 TTMLWLPHDIFYHRKLRL 76
TT+LWLP +FY + R+
Sbjct: 370 TTLLWLPGSVFYPLQRRI 387
>04_04_1006 + 30048618-30050087
Length = 489
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 129 TTMLWLPHDIFYHRKLRL 76
TT+LWLP +FY + R+
Sbjct: 370 TTLLWLPGSVFYPLQRRI 387
>02_04_0440 + 22954950-22955213,22955317-22956621,22956791-22957522
Length = 766
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = -1
Query: 78 LILELYMWVRTHVHRRVIR 22
L+L+L+ W R+HV R ++R
Sbjct: 299 LLLQLWSWERSHVGRPLVR 317
>02_04_0179 +
20682852-20684510,20684593-20684661,20684741-20684809,
20686779-20688206
Length = 1074
Score = 25.8 bits (54), Expect = 6.7
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -3
Query: 142 ARPSYHYAMVASRYFLPPKTQANFRVVHVGSNPRP*TRNPAALPT 8
A+P A VA PP T + V G P+P +PA+ PT
Sbjct: 42 AQPQPQQATVAEGDPPPPATGSAEEVAGNGEPPQPPATDPASEPT 86
>01_06_0644 +
30821811-30821855,30822707-30822976,30823079-30824383,
30824551-30824692,30824752-30825275
Length = 761
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = -1
Query: 78 LILELYMWVRTHVHRRVIR 22
L+L+L+ W R+HV R ++R
Sbjct: 316 LLLQLWSWERSHVGRPLVR 334
>01_05_0195 - 19111983-19112477,19112646-19113950,19114053-19114322,
19118884-19118950,19119229-19119284,19119530-19119590,
19120181-19120297,19120570-19120682,19120774-19120848,
19121464-19122045,19122056-19122271,19122372-19122497,
19126152-19126190,19126266-19126360,19126423-19126962,
19127102-19127327,19127385-19127437,19127534-19127701,
19128353-19128707,19128785-19128876,19129891-19129993
Length = 1717
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = -1
Query: 78 LILELYMWVRTHVHRRVIR 22
L+L+L+ W R+HV R ++R
Sbjct: 1329 LLLQLWSWERSHVGRPLVR 1347
>05_06_0248 + 26673107-26674351
Length = 414
Score = 25.4 bits (53), Expect = 8.9
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +3
Query: 12 GSAAGLRVYGRGFEP 56
G+AA L YGRG+EP
Sbjct: 237 GAAAALLGYGRGYEP 251
>04_01_0554 - 7139623-7140390
Length = 255
Score = 25.4 bits (53), Expect = 8.9
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -1
Query: 126 TMLWLPHDIFYHRKLRLILELYMWVRTHVHRRVIRPHYQP 7
T L L HD + + RL L VR V +R I+ H QP
Sbjct: 54 TNLLLNHDAPFLDRFRLRLPSSWHVRGGVQQRDIKSHSQP 93
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,696,685
Number of Sequences: 37544
Number of extensions: 200494
Number of successful extensions: 417
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 363831720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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