Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_G02
         (306 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical p...    26   4.5  
Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical pr...    26   4.5  
Z35639-3|CAA84695.2|  780|Caenorhabditis elegans Hypothetical pr...    26   4.5  
U58083-1|AAC47120.1|  780|Caenorhabditis elegans CUL-1 protein.        26   4.5  
Z98851-5|CAB11541.1|  596|Caenorhabditis elegans Hypothetical pr...    26   6.0  
Z98851-4|CAB11542.1|  607|Caenorhabditis elegans Hypothetical pr...    26   6.0  

>Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical
            protein F36A2.13 protein.
          Length = 2944

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -1

Query: 159  PGSGSWPGRPTTMLWLPHDIFYHRKLRLILELYMWVRTHVHRRVIR 22
            P +G WP   + ML    D+F       I  LY  V  +  +RV+R
Sbjct: 2886 PAAGKWPTSASVMLRPQEDVFLPTANTCISRLY--VPVYSSKRVLR 2929


>Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical protein
            F36A2.13 protein.
          Length = 2944

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -1

Query: 159  PGSGSWPGRPTTMLWLPHDIFYHRKLRLILELYMWVRTHVHRRVIR 22
            P +G WP   + ML    D+F       I  LY  V  +  +RV+R
Sbjct: 2886 PAAGKWPTSASVMLRPQEDVFLPTANTCISRLY--VPVYSSKRVLR 2929


>Z35639-3|CAA84695.2|  780|Caenorhabditis elegans Hypothetical
           protein D2045.6 protein.
          Length = 780

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 153 SGSWPGRPTTMLWLPHDI 100
           SGSWP  PTT + LP  +
Sbjct: 547 SGSWPTFPTTPITLPQQL 564


>U58083-1|AAC47120.1|  780|Caenorhabditis elegans CUL-1 protein.
          Length = 780

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 153 SGSWPGRPTTMLWLPHDI 100
           SGSWP  PTT + LP  +
Sbjct: 547 SGSWPTFPTTPITLPQQL 564


>Z98851-5|CAB11541.1|  596|Caenorhabditis elegans Hypothetical
           protein H12I19.5b protein.
          Length = 596

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -1

Query: 99  FYHRKLRLILELYMWV 52
           FYHR+L+ IL LY+ V
Sbjct: 69  FYHRRLKRILPLYLLV 84


>Z98851-4|CAB11542.1|  607|Caenorhabditis elegans Hypothetical
           protein H12I19.5a protein.
          Length = 607

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -1

Query: 99  FYHRKLRLILELYMWV 52
           FYHR+L+ IL LY+ V
Sbjct: 69  FYHRRLKRILPLYLLV 84


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,955,804
Number of Sequences: 27780
Number of extensions: 163188
Number of successful extensions: 353
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 323034540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)