Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_F24
(216 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 26 0.78
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|... 26 0.78
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 25 1.8
SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo... 24 3.1
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces... 24 3.1
SPAC17C9.10 |stm1||G-protein coupled receptor Stm1|Schizosacchar... 24 3.1
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa... 24 3.1
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 23 4.1
SPAC1952.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 23 4.1
SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|... 23 5.5
SPCC417.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 23 5.5
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 23 7.2
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |... 23 7.2
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 23 7.2
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 23 7.2
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 22 9.6
SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyc... 22 9.6
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|... 22 9.6
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce... 22 9.6
>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1210
Score = 25.8 bits (54), Expect = 0.78
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 167 DKSLHQLRTAMHHHPPNQERAVNLSILPV 81
D +LH + +H + E A NLSILP+
Sbjct: 1061 DDNLHHGEIYLRNHILSDEMANNLSILPI 1089
>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 554
Score = 25.8 bits (54), Expect = 0.78
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -3
Query: 133 TTTHRIKKELLICQSFRCPGLVRFPVLSQIKP 38
T R+ K + RCP ++R+P L IKP
Sbjct: 375 TAPSRLSKGFITEGGIRCPAIIRYPPL--IKP 404
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 24.6 bits (51), Expect = 1.8
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -3
Query: 187 WVTGINQTNRSTN*ERPCTTTHRIKK 110
W+ G N TN + + TT+H + K
Sbjct: 236 WLNGTNSTNGTNSTNSTSTTSHSLTK 261
>SPBC4B4.01c |||fumble family pantothenate kinase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 23.8 bits (49), Expect = 3.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -2
Query: 98 LSILPVSGPGEISRVESN*AAGSTPGGAL 12
+SIL V+GP + R+ + G T G L
Sbjct: 214 VSILKVTGPSQFERIGGSSLGGGTLWGLL 242
>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 815
Score = 23.8 bits (49), Expect = 3.1
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -2
Query: 206 LAEKSLVG-YRN*PDKSLHQLRTAMH 132
+A + + G YR+ PD S+ Q T +H
Sbjct: 103 MATRKIAGTYRDAPDNSMQQTSTGVH 128
>SPAC17C9.10 |stm1||G-protein coupled receptor
Stm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 23.8 bits (49), Expect = 3.1
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 62 KSHQARTPEGLTD*QLFLDSVGGGAWPFLV 151
K+H+A++ EGL+ L SVG ++ F +
Sbjct: 199 KNHKAKSTEGLSIIFFVLASVGNTSYAFSI 228
>SPAC3C7.06c |pit1||serine/threonine protein kinase
Pit1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 650
Score = 23.8 bits (49), Expect = 3.1
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -3
Query: 64 FPVLSQIKPQAPL 26
FPVL QI+P PL
Sbjct: 441 FPVLPQIRPSTPL 453
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 23.4 bits (48), Expect = 4.1
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -1
Query: 171 TRQIAPPTKNGHAPPPTESRKSC*SVNPSGVR 76
T I PP + + P S S +NPS VR
Sbjct: 43 TTFIKPPLETASSSTPIPSSSSSGVLNPSSVR 74
>SPAC1952.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 158
Score = 23.4 bits (48), Expect = 4.1
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = -1
Query: 204 SRKESRGLPELTRQ--IAPPTKNGHAPPP 124
S + +P + Q I PP K+ APPP
Sbjct: 91 SSSQQTDIPNVRPQPHIPPPRKSDEAPPP 119
>SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 187
Score = 23.0 bits (47), Expect = 5.5
Identities = 7/10 (70%), Positives = 10/10 (100%)
Frame = +2
Query: 17 HHQEWSLRLN 46
+HQ+W+LRLN
Sbjct: 120 YHQKWALRLN 129
>SPCC417.03 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 100
Score = 23.0 bits (47), Expect = 5.5
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = -2
Query: 215 DAYLAEKSLVGYRN*PDKSLHQLRTAMHHHPPNQER 108
D+Y +V + N + Q T++HH P ++R
Sbjct: 24 DSYTPYTYIVSFHNFVRFPIKQRNTSIHHAPNKRKR 59
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 22.6 bits (46), Expect = 7.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 104 VNLSILPVSGPGEISRVESN*AAGST 27
VN S+ P+S I++V N GST
Sbjct: 277 VNGSLSPLSNSSSINQVHQNETHGST 302
>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 22.6 bits (46), Expect = 7.2
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -2
Query: 176 N*PDKSLHQLRTAMHH 129
N P S+HQLR A++H
Sbjct: 498 NSPLSSVHQLREALNH 513
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 22.6 bits (46), Expect = 7.2
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 141 GHAPPPTESRKSC*SVNP 88
GH PPP++S S SV P
Sbjct: 213 GHPPPPSDSANS--SVTP 228
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 22.6 bits (46), Expect = 7.2
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +2
Query: 134 AWPFLVGGAICLVNSGNPRDSFL 202
+WP LV ICL + +SFL
Sbjct: 891 SWPLLVQLTICLARNNLIDNSFL 913
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = -1
Query: 162 IAPPTKNGHAPPPTESRKSC*SVNPSGV 79
++PP+ G+ P P S + +V+PS +
Sbjct: 383 VSPPSLAGNQPSPLSSPLTNSNVSPSTI 410
>SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 150
Score = 22.2 bits (45), Expect = 9.6
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = -1
Query: 156 PPTKNGHAPPPTE 118
PP + PPPTE
Sbjct: 99 PPMSQAYRPPPTE 111
>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 461
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -1
Query: 159 APPTKNGHAPPPTESRKSC*SVN 91
+P T + +APP S +SC + N
Sbjct: 419 SPTTLSTNAPPSPSSGRSCSNCN 441
>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 568
Score = 22.2 bits (45), Expect = 9.6
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3
Query: 6 RRKGTTRSGACGL 44
R+ GTT G CGL
Sbjct: 526 RKYGTTEHGGCGL 538
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,013,184
Number of Sequences: 5004
Number of extensions: 18177
Number of successful extensions: 56
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 51
effective length of database: 2,107,274
effective search space used: 42145480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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