Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_F24
(216 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353... 29 0.39
07_01_0130 - 963856-965454 28 0.89
12_02_0744 - 22704637-22705341 27 2.1
03_06_0023 + 31089351-31089822,31089921-31090795 27 2.1
05_06_0282 + 26915249-26915881 27 2.7
04_04_0188 - 23433753-23436572 27 2.7
01_03_0076 - 12241408-12241545,12241719-12241790,12242173-122422... 27 2.7
01_06_0540 + 30084698-30086211,30086422-30086485,30086667-30086771 26 3.6
01_06_0536 + 30068881-30070383 26 3.6
04_04_1699 + 35462160-35462555,35463114-35463196,35463317-354633... 26 4.8
12_02_0526 - 20032206-20033106,20034853-20035181 25 6.3
11_05_0001 + 18233550-18233610,18234627-18234943 25 6.3
08_01_0312 + 2764744-2767390,2767632-2767990 25 6.3
06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26... 25 6.3
03_06_0494 + 34319825-34320094 25 6.3
12_02_0930 + 24508728-24508989,24509084-24509358,24510120-245103... 25 8.3
11_06_0611 + 25461469-25461655,25461670-25462238 25 8.3
08_01_0004 + 39265-39440,39545-39652,41955-43528,43650-43996,440... 25 8.3
07_01_0123 - 927691-929223,930050-930268 25 8.3
04_03_0395 - 15356255-15356292,15356507-15356620,15356728-153568... 25 8.3
03_05_0448 - 24426509-24426737,24427306-24427401,24427723-244278... 25 8.3
03_05_0222 + 22082863-22082938,22083261-22083333,22083451-220834... 25 8.3
03_03_0249 + 15832086-15833261 25 8.3
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510... 25 8.3
02_04_0583 + 24078766-24079800,24080585-24081643 25 8.3
01_06_1389 - 36969414-36969436,36970027-36970394,36970474-369706... 25 8.3
01_06_0226 - 27684093-27685091 25 8.3
>09_02_0048 -
3532663-3533475,3534086-3534589,3534715-3535740,
3536083-3536226,3536974-3537375,3537499-3537721,
3537830-3542368,3542480-3542599,3543005-3543038,
3543922-3544102,3544198-3544815,3545022-3551098,
3551139-3551304,3551508-3551614,3552056-3552178,
3553417-3553642
Length = 5100
Score = 29.5 bits (63), Expect = 0.39
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +3
Query: 99 INSSFLIRWVVVHGRS*LVERFVWLIPVTH 188
+N+S L RW ++ R LV R + L PVTH
Sbjct: 792 VNASGLTRWALLLSRLLLVLRHMLLYPVTH 821
>07_01_0130 - 963856-965454
Length = 532
Score = 28.3 bits (60), Expect = 0.89
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = -2
Query: 155 HQLRTAMHHHPPNQERAVNLSILPVSGPGEISR 57
H + + PPN NL +LP+ GP ++ +
Sbjct: 195 HIINFLLRPEPPNTLSVDNLGVLPIIGPAKVGK 227
>12_02_0744 - 22704637-22705341
Length = 234
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 4 RGGRAPPGVEPAA*FDSTREISPGPDTGR 90
R R PP PA S+R +SP P +GR
Sbjct: 93 RHRRRPPRSSPAPTSSSSRGVSPPPTSGR 121
>03_06_0023 + 31089351-31089822,31089921-31090795
Length = 448
Score = 27.1 bits (57), Expect = 2.1
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = -3
Query: 211 PI*QKRVSWVT-GINQTNRSTN*ERPCTTTHRIK-KELLICQSFRCPGLVRFPVLSQIKP 38
PI + WV+ G Q R N + T + E++IC +FR +LS P
Sbjct: 171 PIDAAEIPWVSLGSTQERRRYNIQNVFKTNRLMALAEMIICNTFREIESEALELLSNALP 230
Query: 37 QAPLL 23
PLL
Sbjct: 231 VGPLL 235
>05_06_0282 + 26915249-26915881
Length = 210
Score = 26.6 bits (56), Expect = 2.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 168 RQIAPPTKNGHAPPPTESRKS 106
RQ+APP G+ PP T R++
Sbjct: 156 RQLAPPPPMGNPPPNTHRRRT 176
>04_04_0188 - 23433753-23436572
Length = 939
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 183 LPELTRQIAPPTKNGHAPPPTE 118
L E RQ+A + G APPPT+
Sbjct: 35 LREALRQLAARSARGRAPPPTD 56
>01_03_0076 -
12241408-12241545,12241719-12241790,12242173-12242289,
12243307-12245127,12245361-12245810
Length = 865
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +2
Query: 137 WPFLVGGAICLVNSGNPRDSFL 202
WP L AI V SGN R SF+
Sbjct: 235 WPELASSAIDYVQSGNRRPSFV 256
>01_06_0540 + 30084698-30086211,30086422-30086485,30086667-30086771
Length = 560
Score = 26.2 bits (55), Expect = 3.6
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -2
Query: 128 HPPNQERAVNLSILPVSGPGEISR 57
HPP E ++ +LP+ GPG + +
Sbjct: 191 HPPGGEEVID--VLPIIGPGRVGK 212
>01_06_0536 + 30068881-30070383
Length = 500
Score = 26.2 bits (55), Expect = 3.6
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -2
Query: 122 PNQERAVNLSILPVSGPGEISR 57
PN A +++LP+ GPG + +
Sbjct: 190 PNHPSAKGINVLPIIGPGRVGK 211
>04_04_1699 +
35462160-35462555,35463114-35463196,35463317-35463378,
35463745-35463806,35463932-35463991,35464079-35464111,
35464196-35464261,35464349-35464393
Length = 268
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -1
Query: 156 PPTKNGHAPPPTESR 112
PP K GH PPP R
Sbjct: 52 PPRKRGHPPPPPPRR 66
>12_02_0526 - 20032206-20033106,20034853-20035181
Length = 409
Score = 25.4 bits (53), Expect = 6.3
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +2
Query: 11 EGHHQEWSLRLNLTQHGKSHQARTPEGLTD*QLFLDSVGGGAWPFL 148
EGHHQ+ + + Q + H +R G D + + V + PFL
Sbjct: 361 EGHHQQQQQQHQMLQQQQQHMSRNVMGEWDLEELMKDV--SSLPFL 404
>11_05_0001 + 18233550-18233610,18234627-18234943
Length = 125
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +2
Query: 152 GGAICLVNSGNP 187
GG +CLVNSG+P
Sbjct: 86 GGNLCLVNSGDP 97
>08_01_0312 + 2764744-2767390,2767632-2767990
Length = 1001
Score = 25.4 bits (53), Expect = 6.3
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Frame = -2
Query: 116 QERAVNLSILPVSGP-----GEISRVESN*AAGSTPGGALPPR 3
Q R ++++ VSGP GE++R+ES + GA+PPR
Sbjct: 250 QLRYLDIAAANVSGPLPPELGELTRLESLFLFKNRIAGAIPPR 292
>06_01_0026 +
265755-265968,267319-267468,267694-267738,267786-268460,
268779-268843,268854-269073,269163-269438,269547-269663,
269776-269853,269930-270184,270235-270323,270403-270816
Length = 865
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -2
Query: 140 AMHHHPPNQERAVNLSILPVSGPGEISRVE 51
A + H + +AV+ + VSG E++RVE
Sbjct: 125 AQNEHVTDDGKAVSEHVTEVSGKNEVTRVE 154
>03_06_0494 + 34319825-34320094
Length = 89
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -1
Query: 201 RKESRGLPELTRQIAPPTKNGHAPPP 124
RK LPEL ++ P K G+ PP
Sbjct: 45 RKRPVALPELGKERREPPKGGYFQPP 70
>12_02_0930 +
24508728-24508989,24509084-24509358,24510120-24510396,
24510631-24510707,24510827-24511123
Length = 395
Score = 25.0 bits (52), Expect = 8.3
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -1
Query: 159 APPTKNGHAPPPTESRKSC*SVNPSGVRA 73
APP + APP T RKS S GV+A
Sbjct: 113 APPPEM-FAPPATAKRKSAASAAAEGVKA 140
>11_06_0611 + 25461469-25461655,25461670-25462238
Length = 251
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -1
Query: 183 LPELTRQIAPPTKNGHAPPPTESRK 109
LP +AP +G APPP R+
Sbjct: 178 LPSRASPLAPAGSDGMAPPPLPGRR 202
>08_01_0004 +
39265-39440,39545-39652,41955-43528,43650-43996,
44090-44322,45308-45412,45531-45705,46443-46658
Length = 977
Score = 25.0 bits (52), Expect = 8.3
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = -2
Query: 137 MHHHPPNQERAVNLSI--LPVSGPGEISRVESN*AAGSTPGGALP 9
M + P R+ N ++ LP+ G + ++N A G+TPG LP
Sbjct: 575 MGNCPSESGRSTNCTVGALPLQKRGLGTSHQTNDAIGTTPGPLLP 619
>07_01_0123 - 927691-929223,930050-930268
Length = 583
Score = 25.0 bits (52), Expect = 8.3
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -2
Query: 107 AVNLSILPVSGPGEISR 57
A NL +LP+ GPG++ +
Sbjct: 267 AENLGVLPIIGPGKVGK 283
>04_03_0395 -
15356255-15356292,15356507-15356620,15356728-15356809,
15356862-15357236,15357256-15357320,15357534-15357662,
15357759-15357854,15357959-15357983
Length = 307
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 113 LDSVGGGAWPFLVGGAICLVNSGNPR 190
+DS GG + G +CL G+PR
Sbjct: 1 MDSTGGNSGKLFDGMHLCLSEQGSPR 26
>03_05_0448 -
24426509-24426737,24427306-24427401,24427723-24427847,
24428694-24428846,24429921-24430247,24431415-24431630,
24431768-24432112,24433897-24434253
Length = 615
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -2
Query: 170 PDKSLHQLRTAMHHHPPNQERAVNLSIL 87
P + HQ HHP N E++ N I+
Sbjct: 237 PGQDQHQKMVLGTHHPQNSEKSPNYLII 264
>03_05_0222 +
22082863-22082938,22083261-22083333,22083451-22083496,
22083639-22083753,22083847-22083926,22084022-22084621,
22084718-22084822,22084916-22085248
Length = 475
Score = 25.0 bits (52), Expect = 8.3
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = -2
Query: 137 MHHHPPNQERAVNLSI 90
+H HPPNQ + N+++
Sbjct: 265 LHRHPPNQSQRPNVTV 280
>03_03_0249 + 15832086-15833261
Length = 391
Score = 25.0 bits (52), Expect = 8.3
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -1
Query: 213 RLFSRKESRGLPELTRQI-APPTKNGHAPPPTESRKSC*SVNPSGVRAW*DF 61
R F+ + RG P L RQ+ AP +P P+ +R+S S R W +F
Sbjct: 196 RAFAAEPPRGAP-LRRQLSAPMPPPAPSPAPSTARRSLDSATGKAPR-WIEF 245
>03_02_0027 +
5100865-5100878,5102241-5102708,5102795-5103021,
5103670-5104577
Length = 538
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -1
Query: 159 APPTKNGHAPPPTESRKSC*SVNPSGV 79
APP PPP + C S + SGV
Sbjct: 253 APPPVTAPPPPPVAAPNDCVSSSSSGV 279
>02_04_0583 + 24078766-24079800,24080585-24081643
Length = 697
Score = 25.0 bits (52), Expect = 8.3
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Frame = -1
Query: 183 LPELTRQI--APPTKNGHAPPPTESR 112
LP L R + PP HAPPP SR
Sbjct: 25 LPPLRRCLHAEPPPPPHHAPPPVASR 50
>01_06_1389 -
36969414-36969436,36970027-36970394,36970474-36970644,
36970727-36971559,36971642-36972103,36972182-36972915,
36973004-36973133
Length = 906
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = -1
Query: 183 LPELTRQIAPPTKNG-HAPPPTESRKSC 103
+P +T + PT H P P++ R SC
Sbjct: 393 IPRVTTPVMHPTPRAQHDPSPSQHRSSC 420
>01_06_0226 - 27684093-27685091
Length = 332
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -1
Query: 189 RGLPELTRQIAPPTKNGHAPPPT 121
RGLP + R++ P+++ P PT
Sbjct: 130 RGLPMMRRRLESPSRSPSPPSPT 152
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,910,729
Number of Sequences: 37544
Number of extensions: 170879
Number of successful extensions: 599
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 14,793,348
effective HSP length: 51
effective length of database: 12,878,604
effective search space used: 257572080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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