Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_F24
         (216 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical pr...    30   0.26 
Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical pr...    30   0.26 
U23517-11|AAY44017.1|  288|Caenorhabditis elegans Hypothetical p...    29   0.59 
U23515-13|AAK21453.1|  823|Caenorhabditis elegans Hypothetical p...    27   1.4  
AC024791-31|AAF60655.1|  181|Caenorhabditis elegans Hypothetical...    27   1.4  
Z83123-13|CAB05615.2| 1208|Caenorhabditis elegans Hypothetical p...    26   4.2  
Z70680-10|CAA94577.2| 1208|Caenorhabditis elegans Hypothetical p...    26   4.2  
AF099925-3|AAC69507.1|  394|Caenorhabditis elegans Collagen prot...    26   4.2  
L23648-6|AAA28032.2|  390|Caenorhabditis elegans Hypothetical pr...    25   5.5  
Z68303-6|CAD89754.1|  708|Caenorhabditis elegans Hypothetical pr...    25   7.3  
Z68303-5|CAA92639.2|  706|Caenorhabditis elegans Hypothetical pr...    25   7.3  
U40029-5|AAA81125.2|  457|Caenorhabditis elegans Hypothetical pr...    25   7.3  
U40029-4|ABD94116.1|  471|Caenorhabditis elegans Hypothetical pr...    25   7.3  
Z82266-4|CAB05180.1|  227|Caenorhabditis elegans Hypothetical pr...    25   9.7  
Z69361-3|CAA93289.1|  533|Caenorhabditis elegans Hypothetical pr...    25   9.7  
Z68882-20|CAA93112.1|  533|Caenorhabditis elegans Hypothetical p...    25   9.7  
Z68160-2|CAA92290.2|  403|Caenorhabditis elegans Hypothetical pr...    25   9.7  
U64859-1|AAC69092.2|  468|Caenorhabditis elegans Hypothetical pr...    25   9.7  

>Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical
           protein R10E11.1b protein.
          Length = 2056

 Score = 29.9 bits (64), Expect = 0.26
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -2

Query: 128 HPPNQERAVNLS-ILPVSGPGEISRVESN*AAGSTPGGALPP 6
           +PP Q+ A N S ++P   P  +S        G +PGG  PP
Sbjct: 120 YPPGQQNAFNRSPMMPNGTPNMMSPPSMGRVPGPSPGGPQPP 161


>Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical
           protein R10E11.1a protein.
          Length = 2045

 Score = 29.9 bits (64), Expect = 0.26
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -2

Query: 128 HPPNQERAVNLS-ILPVSGPGEISRVESN*AAGSTPGGALPP 6
           +PP Q+ A N S ++P   P  +S        G +PGG  PP
Sbjct: 120 YPPGQQNAFNRSPMMPNGTPNMMSPPSMGRVPGPSPGGPQPP 161


>U23517-11|AAY44017.1|  288|Caenorhabditis elegans Hypothetical
           protein D1022.9 protein.
          Length = 288

 Score = 28.7 bits (61), Expect = 0.59
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 23  QEWSLRLNLTQHGKSHQARTPEGLTD*QLFLD 118
           Q W L L    H K + ARTP  + D ++F++
Sbjct: 59  QYWPLMLARFSHEKPYVARTPAAIADAEMFIN 90


>U23515-13|AAK21453.1|  823|Caenorhabditis elegans Hypothetical
           protein R144.2a protein.
          Length = 823

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 20  HQEWSLRLNLTQHGKSHQARTP 85
           H +W ++ NL +HG ++ A  P
Sbjct: 696 HMDWHVKQNLARHGSNNSAAVP 717


>AC024791-31|AAF60655.1|  181|Caenorhabditis elegans Hypothetical
           protein Y47G6A.3 protein.
          Length = 181

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 31  EPAA*FDSTREISPGPDTGRIDRL 102
           EP+A FD+  ++ PG    RIDR+
Sbjct: 100 EPSALFDNANDLLPGQKEERIDRM 123


>Z83123-13|CAB05615.2| 1208|Caenorhabditis elegans Hypothetical
           protein C25G4.10 protein.
          Length = 1208

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 210 LFSRKESRGLPELTRQIAPPTKNGHAPPPTESRKSC 103
           + ++K+S GLPE T  I P  K+G   P  +   +C
Sbjct: 697 ILAQKDSPGLPEPTIVIEPDHKDGVFSPGEKISINC 732


>Z70680-10|CAA94577.2| 1208|Caenorhabditis elegans Hypothetical
           protein C25G4.10 protein.
          Length = 1208

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 210 LFSRKESRGLPELTRQIAPPTKNGHAPPPTESRKSC 103
           + ++K+S GLPE T  I P  K+G   P  +   +C
Sbjct: 697 ILAQKDSPGLPEPTIVIEPDHKDGVFSPGEKISINC 732


>AF099925-3|AAC69507.1|  394|Caenorhabditis elegans Collagen protein
           69 protein.
          Length = 394

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -1

Query: 213 RLFSRKESRGLPELTRQIAPPTKNGHAPPP 124
           R  S    +G P L  Q  PP   G+ PPP
Sbjct: 249 RQISLPGRKGPPGLPGQCGPPGPPGYTPPP 278


>L23648-6|AAA28032.2|  390|Caenorhabditis elegans Hypothetical
           protein F44B9.5 protein.
          Length = 390

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -1

Query: 96  VNPSGVRAW*DFPC*VKLSRRLHSWW 19
           V P  VR W  +P  V +S    SWW
Sbjct: 191 VQPVSVRVWRPYPWKVSVSVLGSSWW 216


>Z68303-6|CAD89754.1|  708|Caenorhabditis elegans Hypothetical
           protein ZK809.5b protein.
          Length = 708

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 147 KNGHAPPPTESRKSC*SVNPSG 82
           + GH    TESRK   S++PSG
Sbjct: 400 RQGHNQKNTESRKIIRSISPSG 421


>Z68303-5|CAA92639.2|  706|Caenorhabditis elegans Hypothetical
           protein ZK809.5a protein.
          Length = 706

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 147 KNGHAPPPTESRKSC*SVNPSG 82
           + GH    TESRK   S++PSG
Sbjct: 398 RQGHNQKNTESRKIIRSISPSG 419


>U40029-5|AAA81125.2|  457|Caenorhabditis elegans Hypothetical
           protein F10G7.5a protein.
          Length = 457

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 125 GGGAWPFLVGGAICLVNSG 181
           G   W  LVGG +C+V  G
Sbjct: 14  GARPWAVLVGGVMCMVTFG 32


>U40029-4|ABD94116.1|  471|Caenorhabditis elegans Hypothetical
           protein F10G7.5b protein.
          Length = 471

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 125 GGGAWPFLVGGAICLVNSG 181
           G   W  LVGG +C+V  G
Sbjct: 28  GARPWAVLVGGVMCMVTFG 46


>Z82266-4|CAB05180.1|  227|Caenorhabditis elegans Hypothetical
           protein F23B2.6 protein.
          Length = 227

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -1

Query: 204 SRKESRGLPELTRQIA-PPTKNGHAPPPTESRK 109
           +R++S G P + R++A PP +   A PP +  K
Sbjct: 169 NRRQSSGKP-INRKVANPPRRQNAAKPPVKKGK 200


>Z69361-3|CAA93289.1|  533|Caenorhabditis elegans Hypothetical
           protein T13H10.1 protein.
          Length = 533

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -1

Query: 216 RRLFSRKESRGLPELTRQIAPPTKNGHAPPP---TESRKSC*SVNPSGVRA 73
           R+  S     G+ +  R +    +NG++P P   ++SR +  + N S ++A
Sbjct: 438 RKSMSNSAEEGVKKNRRPVRTRIRNGNSPSPGFKSQSRSAAENQNKSNLKA 488


>Z68882-20|CAA93112.1|  533|Caenorhabditis elegans Hypothetical
           protein T13H10.1 protein.
          Length = 533

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -1

Query: 216 RRLFSRKESRGLPELTRQIAPPTKNGHAPPP---TESRKSC*SVNPSGVRA 73
           R+  S     G+ +  R +    +NG++P P   ++SR +  + N S ++A
Sbjct: 438 RKSMSNSAEEGVKKNRRPVRTRIRNGNSPSPGFKSQSRSAAENQNKSNLKA 488


>Z68160-2|CAA92290.2|  403|Caenorhabditis elegans Hypothetical
           protein D1046.2 protein.
          Length = 403

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -1

Query: 180 PELTRQIAPPTKNGHA 133
           P LTRQ+  PT N HA
Sbjct: 383 PALTRQVYIPTSNHHA 398


>U64859-1|AAC69092.2|  468|Caenorhabditis elegans Hypothetical
           protein R09F10.3 protein.
          Length = 468

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -1

Query: 192 SRGLPELTRQIAPPTKNGHAPPPTESRKSC*SVNPSG 82
           S G P       P + +G A  P E+R +  + NP G
Sbjct: 41  SHGAPSSVASQPPASVDGKAGAPDEARTASSASNPQG 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,919,539
Number of Sequences: 27780
Number of extensions: 119236
Number of successful extensions: 414
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 12,740,198
effective HSP length: 51
effective length of database: 11,323,418
effective search space used: 226468360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)