Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_F22
         (338 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc...   139   9e-35
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa...   139   9e-35
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz...    38   4e-04
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    25   2.4  
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ...    25   2.4  
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ...    24   7.3  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    24   7.3  
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb...    23   9.6  
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2...    23   9.6  
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual    23   9.6  
SPAC30C2.05 |erv14||cornichon family protein Erv14|Schizosacchar...    23   9.6  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    23   9.6  

>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score =  139 bits (337), Expect = 9e-35
 Identities = 63/102 (61%), Positives = 84/102 (82%)
 Frame = +3

Query: 33  IQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGV 212
           +Q+VQ FG+K  ATAVA+CK G G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+GV
Sbjct: 1   MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60

Query: 213 DIRVTGKGGGHVAQVYAIRQAVSKALMACYQKYVDEASKKEI 338
           DIRV   GGGHV+Q+YAIRQA+SKA++A YQK+VDE SK E+
Sbjct: 61  DIRVRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAEL 102


>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 140

 Score =  139 bits (337), Expect = 9e-35
 Identities = 63/102 (61%), Positives = 84/102 (82%)
 Frame = +3

Query: 33  IQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGV 212
           +Q+VQ FG+K  ATAVA+CK G G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+GV
Sbjct: 1   MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60

Query: 213 DIRVTGKGGGHVAQVYAIRQAVSKALMACYQKYVDEASKKEI 338
           DIRV   GGGHV+Q+YAIRQA+SKA++A YQK+VDE SK E+
Sbjct: 61  DIRVRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAEL 102


>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 37.9 bits (84), Expect = 4e-04
 Identities = 23/80 (28%), Positives = 38/80 (47%)
 Frame = +3

Query: 54  GRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVDIRVTGK 233
           G++K++ A      G G   VNG P D+   R++  K      L    + +  ++  T  
Sbjct: 12  GKRKSSKATVKMLPGTGKFYVNGSPFDVYFQRMVHRK-HAVYPLAACNRLTNYNVWATVH 70

Query: 234 GGGHVAQVYAIRQAVSKALM 293
           GGG   Q  A+  A+SK+L+
Sbjct: 71  GGGPTGQSGAVHAAISKSLI 90


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 12/39 (30%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +1

Query: 211 WILE*LEKVVDMLHRFMQSDKPSLKPLW-LATRNM*TKH 324
           W ++  EK++  +++++QS+ PS    W L ++NM  +H
Sbjct: 310 WTIQEKEKLIKTVNQYLQSN-PSSPIQWSLISKNMRNRH 347


>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -2

Query: 118 FTRNTPCPRLQYA-TAVAVFLRPKTCTAWIGS 26
           +T+N PCPR  ++ T       P T  +WI S
Sbjct: 341 YTQNIPCPRAGHSHTYELAPASPNTSISWIQS 372


>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 655

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 211 WILE*LEKVVDMLHRFMQSDKPS 279
           W +E   +  D  +RFM+ D+PS
Sbjct: 588 WKVELFRRAPDEWYRFMKQDEPS 610


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 118 FTRNTPCPRLQYATAVAVFLRPKTCTAWIGSRLASC 11
           F+R+  C  ++ A +V    RPK  TA I    + C
Sbjct: 748 FSRSMDCDSIKNALSVVSSTRPKNTTAVIDVDSSFC 783


>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 207 QRTFPCLAKG*VPVVCTEEVWVL 139
           Q T   ++   VP+VC    WVL
Sbjct: 213 QETLKKISSAQVPIVCVSPKWVL 235


>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
           Byr2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 659

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +3

Query: 234 GGGHVAQVYAIRQAVSKALMACYQKYVDEASKKE 335
           G G   QVY    A S  LMA  Q  +D  S+ +
Sbjct: 401 GSGSFGQVYLGMNASSGELMAVKQVILDSVSESK 434


>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 304

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 151 FFSTNYRNLSFC*ARKSSLVW 213
           F STN+++ S   + KS+L+W
Sbjct: 79  FLSTNFQDCSTLPSVKSTLIW 99


>SPAC30C2.05 |erv14||cornichon family protein
           Erv14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 141

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 132 DLVEPRLLQYKLQEPILLLGKE 197
           DLV P ++ + L   +LLLGK+
Sbjct: 53  DLVMPEIISHTLVTLLLLLGKK 74


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -1

Query: 338  DLLLRCFVYIF 306
            DL+ RCF+YIF
Sbjct: 3775 DLIRRCFLYIF 3785


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,548,503
Number of Sequences: 5004
Number of extensions: 31288
Number of successful extensions: 94
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)