Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_F22
(338 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0152 - 1168928-1169377 138 1e-33
11_01_0155 - 1287003-1287452 138 1e-33
07_03_1553 - 27653473-27653490,27653634-27653673,27653852-276539... 34 0.025
03_06_0097 - 31632238-31632525,31633386-31633769 34 0.025
02_05_0330 - 27996080-27996757,27996836-27997366,27998124-27998303 29 0.70
04_04_1154 - 31297628-31298020,31298150-31298300,31298389-312986... 28 2.1
06_01_0585 - 4200230-4201282 27 2.8
04_04_1233 + 31966790-31967095,31967212-31967289,31967335-319673... 27 5.0
04_04_0917 - 29404341-29404519,29404610-29404744,29404898-294052... 27 5.0
01_07_0358 + 43039613-43039677,43039742-43039807,43039918-43040029 27 5.0
09_04_0524 + 18321110-18323978,18324098-18324576 26 8.7
08_02_0091 + 12258666-12258974,12259195-12259637,12259732-122598... 26 8.7
02_02_0456 + 10489544-10491064,10491506-10491632,10491633-10492606 26 8.7
>12_01_0152 - 1168928-1169377
Length = 149
Score = 138 bits (334), Expect = 1e-33
Identities = 61/105 (58%), Positives = 82/105 (78%)
Frame = +3
Query: 24 REPIQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKF 203
R P VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K EPILL G+ +F
Sbjct: 7 RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66
Query: 204 SGVDIRVTGKGGGHVAQVYAIRQAVSKALMACYQKYVDEASKKEI 338
+D+R+ +GGG +Q+YAIRQA++KAL+A YQKYVDEASKKE+
Sbjct: 67 KDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEV 111
>11_01_0155 - 1287003-1287452
Length = 149
Score = 138 bits (334), Expect = 1e-33
Identities = 61/105 (58%), Positives = 82/105 (78%)
Frame = +3
Query: 24 REPIQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKF 203
R P VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K EPILL G+ +F
Sbjct: 7 RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66
Query: 204 SGVDIRVTGKGGGHVAQVYAIRQAVSKALMACYQKYVDEASKKEI 338
+D+R+ +GGG +Q+YAIRQA++KAL+A YQKYVDEASKKE+
Sbjct: 67 KDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEV 111
>07_03_1553 -
27653473-27653490,27653634-27653673,27653852-27653939,
27654150-27654230,27654644-27655084,27655692-27656325
Length = 433
Score = 34.3 bits (75), Expect = 0.025
Identities = 24/79 (30%), Positives = 37/79 (46%)
Frame = +3
Query: 54 GRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVDIRVTGK 233
G++K + A + + G G VN + D P +L ++ + D+ T K
Sbjct: 295 GKRKCSIARVWIQPGDGKFIVNDKQFDSYFP-ILDHRADLLRPFTVTKTLGRWDVTCTVK 353
Query: 234 GGGHVAQVYAIRQAVSKAL 290
GGG QV AIR +S+AL
Sbjct: 354 GGGVSGQVGAIRLGISRAL 372
>03_06_0097 - 31632238-31632525,31633386-31633769
Length = 223
Score = 34.3 bits (75), Expect = 0.025
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Frame = +3
Query: 36 QAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLV---EPRLLQYKLQEPILLLGKEKFS 206
Q + GR+KTA A + G G + +N R P ++Y + P++ LG E +
Sbjct: 96 QRITATGRRKTAIARVVLQEGTGRVFINFRDAKEYLQGNPMWMEY-CKVPLVTLGFE--N 152
Query: 207 GVDIRVTGKGGGHVAQVYAIRQAVSKALM 293
D+ V GGG Q AI V++AL+
Sbjct: 153 SYDVFVKVHGGGLSGQAQAICLGVARALV 181
>02_05_0330 - 27996080-27996757,27996836-27997366,27998124-27998303
Length = 462
Score = 29.5 bits (63), Expect = 0.70
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 71 NCGSILQTRTWSVACKWTPPRPGRTQTSS 157
+C S +Q R+ SV W PP G+T+T S
Sbjct: 275 DCVSAMQQRSSSVRLIWGPPGTGKTKTIS 303
>04_04_1154 -
31297628-31298020,31298150-31298300,31298389-31298620,
31298700-31298910,31299137-31299255,31299341-31299415,
31299991-31300189,31300258-31300664,31300775-31300839,
31300967-31301011,31301449-31301520,31301597-31301671,
31301912-31301983,31302178-31302249,31302525-31302596,
31302880-31302951,31303056-31303127,31304064-31304135,
31304375-31304561,31304686-31304815
Length = 930
Score = 27.9 bits (59), Expect = 2.1
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 117 NGRPLDLVEPRLLQYKLQEPILLL 188
NG PLD V+P+L ++ +E I ++
Sbjct: 807 NGHPLDFVDPKLSEFNSEEVIRVI 830
>06_01_0585 - 4200230-4201282
Length = 350
Score = 27.5 bits (58), Expect = 2.8
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 240 GHVAQVYAIRQAVSKALMACYQKYVDEASK 329
GHV V A+++ + A + C++++ DEA K
Sbjct: 213 GHVLSVKALKEVKTSACLVCHKEF-DEADK 241
>04_04_1233 +
31966790-31967095,31967212-31967289,31967335-31967355,
31967390-31967557
Length = 190
Score = 26.6 bits (56), Expect = 5.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 134 VEGASIYTQHSMSSFAVCYRSCSFLTAE 51
+ G+S ++ SSFA Y SF+T+E
Sbjct: 51 ISGSSSFSSGFSSSFATSYDDASFITSE 78
>04_04_0917 -
29404341-29404519,29404610-29404744,29404898-29405225,
29405313-29405532,29405653-29406647,29407233-29407493,
29407534-29407872,29409309-29409497
Length = 881
Score = 26.6 bits (56), Expect = 5.0
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 71 NCGSILQTRTWSVACKWTPPRPGRTQTSS 157
+C S+++ + S+ W PP G+T+T S
Sbjct: 301 DCVSVMENQLSSLKLIWGPPGTGKTKTIS 329
>01_07_0358 + 43039613-43039677,43039742-43039807,43039918-43040029
Length = 80
Score = 26.6 bits (56), Expect = 5.0
Identities = 14/44 (31%), Positives = 16/44 (36%)
Frame = +2
Query: 65 NCNCGSILQTRTWSVACKWTPPRPGRTQTSSVQTTGTYPFARQG 196
NC CGS Q CK++ P T T T A G
Sbjct: 7 NCGCGSSCQCGNGCGGCKYSEVEPTTTTTFLADATNKGSGAASG 50
>09_04_0524 + 18321110-18323978,18324098-18324576
Length = 1115
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +3
Query: 228 GKGGGHVAQVYAIRQAVSKALMACYQKYVDEASKKEI 338
G G G A V+ +RQA+S A + ++ D + K++
Sbjct: 1024 GAGAGADADVHEMRQAMSVAALCVARRADDRPAMKDV 1060
>08_02_0091 +
12258666-12258974,12259195-12259637,12259732-12259873,
12259985-12260209,12260340-12260402,12260486-12260560,
12261900-12262160
Length = 505
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 216 IRVTGKGGGHVAQVYAIRQAVSKALMACYQKYVDEASKK 332
I ++ GGGH A A+R A YQ +V + K+
Sbjct: 74 ILMSDTGGGHRASAEALRDAFRLEFGDAYQVFVRDLGKE 112
>02_02_0456 + 10489544-10491064,10491506-10491632,10491633-10492606
Length = 873
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -1
Query: 287 GFRDGLSDCINLCNMSTTFSSHSNIHTR 204
GF G+++C+NL +T S+ S +H+R
Sbjct: 8 GFISGINECVNLFQWAT--SALSTLHSR 33
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,709,965
Number of Sequences: 37544
Number of extensions: 226614
Number of successful extensions: 672
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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