Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_F20
(239 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy... 29 0.082
SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyc... 26 0.58
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr... 26 0.76
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 25 1.0
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch... 25 1.0
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 24 3.1
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 23 5.4
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce... 23 5.4
SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch... 23 5.4
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc... 23 5.4
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M... 23 5.4
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom... 23 7.1
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos... 23 7.1
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch... 23 7.1
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei... 22 9.4
SPBC16E9.03c |||DUF1783 family protein|Schizosaccharomyces pombe... 22 9.4
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon... 22 9.4
>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 385
Score = 29.1 bits (62), Expect = 0.082
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 71 QLCSGALCAEHASWLFDSTIEISYCHCDEGY 163
Q+C G E+A + +D E ++CH GY
Sbjct: 164 QICDGVRGLEYAVYNYDLPSESTFCHPSNGY 194
>SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 26.2 bits (55), Expect = 0.58
Identities = 18/58 (31%), Positives = 32/58 (55%)
Frame = +3
Query: 63 QTRSCAVELYAPNTHPGYSIRQSRSAIVTVTKDTRVKESLNVYRLVERVTLQMIVVPM 236
Q+ A+E Y+P TH IR + +V + K K +++V +L+ R +LQ +P+
Sbjct: 186 QSHDIAIEAYSPLTH---GIRLNDEKLVPIAK----KLNISVAQLLIRWSLQKGYIPI 236
>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 25.8 bits (54), Expect = 0.76
Identities = 13/55 (23%), Positives = 23/55 (41%)
Frame = +2
Query: 23 INGYVKDQNEACIPDAQLCSGALCAEHASWLFDSTIEISYCHCDEGYEGEGISQC 187
+ G D+++ PDA+ C + + + YC C +G + G S C
Sbjct: 27 LRGVASDKSDLYKPDAK--GNWKCLGSDKLISFNQVNDDYCDCPDGSDEPGTSAC 79
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 25.4 bits (53), Expect = 1.0
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 134 SRLSNRITRMRVRRIKLHCTAARLECMLHF 45
S L+N R + KLHC + L+ LHF
Sbjct: 1047 SFLANNFRDFRRQIRKLHCASLELKSSLHF 1076
>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 815
Score = 25.4 bits (53), Expect = 1.0
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -1
Query: 83 HCTAARLECMLHFDPSRNR*SSAEFLQ 3
+C A +LEC H SR S E+++
Sbjct: 49 NCKAGKLECTYHMPSSRKSSFSPEYVE 75
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 23.8 bits (49), Expect = 3.1
Identities = 10/43 (23%), Positives = 23/43 (53%)
Frame = -1
Query: 227 YNHLQRHTFDQSVHIERFLHPRILRHSDNS*SRLSNRITRMRV 99
Y H QR+ + S + FLH + L+ + + +L +++ ++
Sbjct: 975 YQHWQRNGYSNSWCSKHFLHSKTLKRARDIRQQLVEIMSKQKI 1017
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 23.0 bits (47), Expect = 5.4
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -1
Query: 113 TRMRVRRIKLHCTAARLEC 57
+R RVRR L C A ++ C
Sbjct: 30 SRRRVRRACLSCRAKKIRC 48
>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 23.0 bits (47), Expect = 5.4
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -1
Query: 185 IERFLHPRILRHSDNS*SRLSNRITRMRVRRIKL 84
+ER H + S RLS+ +T++ R +KL
Sbjct: 317 VERLDHSKFYTQSVEEMRRLSDTVTQLEKRVLKL 350
>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 23.0 bits (47), Expect = 5.4
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +2
Query: 26 NGYVKDQNEACIPDAQLC-SGALCAEHASWL 115
N Y+ +E C+PD+ L C E S L
Sbjct: 113 NAYLNTLDETCMPDSPLLWKDKTCLEGTSML 143
>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 609
Score = 23.0 bits (47), Expect = 5.4
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +3
Query: 99 NTHPGYSIRQSRSAIVTVTKDTRVKESLNVYRLVE 203
N HPGY++ Q R ++ D K+ N+ L +
Sbjct: 468 NFHPGYAMDQKR---ISKLSDGITKQDQNIQALAD 499
>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 609
Score = 23.0 bits (47), Expect = 5.4
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 208 TRSTNRYTLRDSFTLVSFVTVTIADLD 128
T + YT +S T+ S TVT+AD D
Sbjct: 74 TNHSTIYTTINSGTVASTYTVTLADGD 100
>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 22.6 bits (46), Expect = 7.1
Identities = 9/30 (30%), Positives = 14/30 (46%)
Frame = +2
Query: 131 EISYCHCDEGYEGEGISQCVPIGRTCDVAN 220
+I H Y G + +P+ RTC V +
Sbjct: 126 QIVQIHLSSFYTGGSFTLEIPVKRTCSVCS 155
>SPBC8D2.01 |gsk31||serine/threonine protein kinase
Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 381
Score = 22.6 bits (46), Expect = 7.1
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -2
Query: 112 PGCVFGA*SSTAQLRVWNACFIL 44
P VFGA T ++ VW+A ++
Sbjct: 194 PELVFGATHYTTKIDVWSAACVI 216
>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 22.6 bits (46), Expect = 7.1
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +3
Query: 93 APNTHPGYSIRQSRSAIV 146
+PNT+ G +R RSA++
Sbjct: 8 SPNTNRGQGLRSERSALL 25
>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 968
Score = 22.2 bits (45), Expect = 9.4
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -1
Query: 131 RLSNRITRMRVRRIKLHCTAARLECM 54
RLS I+ VR K C+ + CM
Sbjct: 653 RLSTDISHSNVRNSKKLCSNGSMNCM 678
>SPBC16E9.03c |||DUF1783 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 249
Score = 22.2 bits (45), Expect = 9.4
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = -3
Query: 102 CSAHKAPLHSCASGM 58
C K+P H+C SG+
Sbjct: 24 CLTVKSPTHNCGSGV 38
>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 22.2 bits (45), Expect = 9.4
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +2
Query: 194 IGRTCDVANDCSPDA 238
IGR C + ++CS D+
Sbjct: 350 IGRNCTIGSNCSIDS 364
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 981,778
Number of Sequences: 5004
Number of extensions: 16315
Number of successful extensions: 64
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 41344840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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