Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_F19
(173 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103 |Sch... 62 1e-11
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces... 39 8e-05
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 28 0.19
SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 1.8
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 1.8
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch... 24 2.3
SPBC21C3.05 |sap62||zinc finger protein Sap62|Schizosaccharomyce... 24 3.1
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 23 4.1
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 23 4.1
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos... 23 7.1
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces... 23 7.1
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 22 9.4
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 22 9.4
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch... 22 9.4
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ... 22 9.4
>SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 61.7 bits (143), Expect = 1e-11
Identities = 25/40 (62%), Positives = 28/40 (70%)
Frame = +3
Query: 48 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQK 167
MP+Y CDYC +LTHDS SVRK H GR H NV+ YY K
Sbjct: 1 MPRYLCDYCQVWLTHDSQSVRKAHNAGRAHIQNVQDYYTK 40
>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 224
Score = 39.1 bits (87), Expect = 8e-05
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +3
Query: 48 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVK 152
+PKYYC YC ++ D+P R++H KH+D +K
Sbjct: 8 IPKYYCKYCQIFV-KDTPFARRSHEQTYKHQDAIK 41
>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
zf-fungal binuclear cluster type |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 977
Score = 27.9 bits (59), Expect = 0.19
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +3
Query: 72 CDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQK 167
CD L H+ P + K++ T R H + + ++Q+
Sbjct: 89 CDQCLKHNIPCIYKSNSTKRSHSRHEEIHHQQ 120
>SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 231
Score = 24.6 bits (51), Expect = 1.8
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -3
Query: 135 VFYLYSEFS*HLASHEL 85
VF LYS FS H SH L
Sbjct: 67 VFNLYSRFSVHTLSHNL 83
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 24.6 bits (51), Expect = 1.8
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +3
Query: 6 RVVCCDLLGNCIVKM 50
RVVC +LL CI+K+
Sbjct: 1321 RVVCVELLSTCILKI 1335
>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 667
Score = 24.2 bits (50), Expect = 2.3
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -1
Query: 155 EFHIVFMFSTCTVSFPDTWRVMS*ICVTIITIIFRH 48
E I+F +TCT+ F ++ + +T++ II RH
Sbjct: 463 ELGIIFSIATCTMMFGLETGIIFGLSITVMQII-RH 497
>SPBC21C3.05 |sap62||zinc finger protein Sap62|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 23.8 bits (49), Expect = 3.1
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 57 YYCDYCDTYLTHDSPSVRKTHCTGRKHKDNV 149
+ C C T TH + + TH G+KH+ N+
Sbjct: 54 FECRLCLT--THANENSYLTHTQGKKHQTNL 82
Score = 22.2 bits (45), Expect = 9.4
Identities = 8/29 (27%), Positives = 14/29 (48%)
Frame = -3
Query: 105 HLASHELNMCHNNHNNISAFLLYNSLTDH 19
HL + E +C H N +++L + H
Sbjct: 50 HLGTFECRLCLTTHANENSYLTHTQGKKH 78
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 23.4 bits (48), Expect = 4.1
Identities = 11/46 (23%), Positives = 22/46 (47%)
Frame = +3
Query: 9 VVCCDLLGNCIVKMPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDN 146
++ C G C+ + C CD Y ++ V +H +GR +++
Sbjct: 826 LLVCFKCGTCVHER----CYVCDDYAENEQMLVSASHLSGRTTRNS 867
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 23.4 bits (48), Expect = 4.1
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -3
Query: 165 FDSRISHCLYV--FYLYSEFS*HLASHELNMCHNNHN 61
F S + CL + +Y +EF L++H N+C + N
Sbjct: 518 FQSSLEGCLNLAAYYEDAEFPQKLSNHLYNLCVKSSN 554
>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 22.6 bits (46), Expect = 7.1
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = +3
Query: 3 TRVVCCDLLGNCIVKMPKYYCDYCDTY 83
T ++C + +V CDYC++Y
Sbjct: 405 TPILCFRCHKSALVSQSILACDYCNSY 431
>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 312
Score = 22.6 bits (46), Expect = 7.1
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +3
Query: 18 CDLLGNCIVKMPK 56
CD + NC+ K PK
Sbjct: 232 CDFVSNCLKKNPK 244
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 22.2 bits (45), Expect = 9.4
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Frame = +3
Query: 69 YCDTY---LTHDSPSVRKTHCTGRKHKDNVKFYYQK 167
YC T+ +T+ S+ T RK D+ F YQK
Sbjct: 741 YCFTFFAPMTYGDKSLSVDEWTRRKWLDSWVFQYQK 776
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 22.2 bits (45), Expect = 9.4
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = +3
Query: 57 YYCDYCDTYLTHDSPSVRK 113
Y+CD+C ++ D S R+
Sbjct: 205 YHCDHCGFQISDDQDSGRE 223
>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 22.2 bits (45), Expect = 9.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1
Query: 104 TWRVMS*ICVTIITIIFRHFYYTI 33
TWR+ I V +I I F Y+T+
Sbjct: 241 TWRIGFLIQVPLIAIAFLCVYFTL 264
>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 22.2 bits (45), Expect = 9.4
Identities = 6/13 (46%), Positives = 10/13 (76%)
Frame = -3
Query: 156 RISHCLYVFYLYS 118
++ HC+Y+FY S
Sbjct: 127 KLGHCVYLFYCIS 139
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 758,743
Number of Sequences: 5004
Number of extensions: 12586
Number of successful extensions: 38
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 38
effective length of database: 2,172,326
effective search space used: 41274194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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