Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_F19
(173 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0369 - 9505330-9505652,9507262-9507532,9507649-9507690,950... 78 9e-16
01_01_1054 + 8330081-8330137,8330229-8330321,8330445-8330504,833... 38 0.002
06_01_0784 - 5868545-5868888,5868990-5869085,5870313-5870394,587... 37 0.002
08_02_1617 - 28265252-28265354,28266546-28266608,28266943-28267151 33 0.043
10_05_0043 + 8503979-8504407,8506484-8506624,8506865-8506975,850... 29 0.40
12_02_0648 + 21490202-21490296,21490547-21490634,21491216-214912... 28 1.2
07_03_1114 + 24072771-24072858,24072960-24073176,24075101-24075974 28 1.2
05_07_0062 + 27423081-27423287,27423372-27423449,27423548-274235... 26 3.7
12_01_1024 - 10467644-10469274,10469424-10469482,10469820-104703... 26 4.9
05_06_0166 + 26093618-26095381,26095820-26096039,26096345-260966... 26 4.9
05_03_0676 - 16853937-16854042,16854605-16854700,16854920-168550... 26 4.9
08_01_1026 - 10366534-10368021,10368505-10368525 25 6.5
08_01_0314 + 2777971-2778607,2778809-2778885,2778964-2779011 25 6.5
08_02_0209 + 14321313-14321750 25 8.6
04_04_0676 - 27187778-27188316,27188441-27188530,27189249-271894... 25 8.6
03_02_1035 - 13557425-13557721,13557855-13558058,13558143-135583... 25 8.6
>02_02_0369 -
9505330-9505652,9507262-9507532,9507649-9507690,
9508416-9508458,9508853-9508860
Length = 228
Score = 78.2 bits (184), Expect = 9e-16
Identities = 31/41 (75%), Positives = 35/41 (85%)
Frame = +3
Query: 48 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKW 170
MP+YYCDYCDTYLTHDSPSVRK H G KHK NV+ YYQ++
Sbjct: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQF 41
>01_01_1054 +
8330081-8330137,8330229-8330321,8330445-8330504,
8330703-8330975,8331107-8331181,8331269-8331325,
8331409-8331549,8331656-8331706,8331795-8331944,
8331974-8332057,8332171-8332273,8332451-8332527,
8333469-8333704,8334000-8334078,8335123-8335218,
8335735-8335828,8336325-8336423,8336663-8337453
Length = 871
Score = 37.5 bits (83), Expect = 0.002
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +3
Query: 54 KYYCDYCDTYLTHDSPSVRKTHCTGRKH 137
KYYCDYC+ D+P+ RK H G +H
Sbjct: 453 KYYCDYCEKQF-QDTPAARKRHLDGAQH 479
>06_01_0784 -
5868545-5868888,5868990-5869085,5870313-5870394,
5870639-5870839,5871810-5871818
Length = 243
Score = 37.1 bits (82), Expect = 0.002
Identities = 14/30 (46%), Positives = 22/30 (73%)
Frame = +3
Query: 60 YCDYCDTYLTHDSPSVRKTHCTGRKHKDNV 149
+CD+C Y+ ++ S+R TH G++HKDNV
Sbjct: 12 WCDFCKIYIANNPLSIR-THEIGKRHKDNV 40
>08_02_1617 - 28265252-28265354,28266546-28266608,28266943-28267151
Length = 124
Score = 32.7 bits (71), Expect = 0.043
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 48 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVK 152
M ++YC +CD Y S SV++ H ++HK +K
Sbjct: 61 MGQFYCLHCDRYFA--SESVKEEHYRSKRHKKRIK 93
>10_05_0043 +
8503979-8504407,8506484-8506624,8506865-8506975,
8507746-8508330
Length = 421
Score = 29.5 bits (63), Expect = 0.40
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 63 CDYCDTYLTHDSPSVRKTHCTGRKHKDNVK 152
C+ C + D+P V + H TG+KHK N++
Sbjct: 280 CEVCK--IQCDTPEVLRIHKTGKKHKKNLE 307
>12_02_0648 +
21490202-21490296,21490547-21490634,21491216-21491260,
21491355-21491387,21491480-21491557,21491647-21491690,
21491765-21491805,21492102-21492184,21492261-21492352,
21492468-21492537,21492838-21492876,21493670-21493687,
21494586-21494713,21495235-21495358,21495585-21495716,
21496092-21496223,21496582-21496665
Length = 441
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +3
Query: 33 NCIVKMPKYYCDYCDTYLTHDSPSVRKTHC 122
NC V M +Y+CD C Y D + HC
Sbjct: 94 NCGVNMGEYFCDVCKFY--DDDTEKGQFHC 121
>07_03_1114 + 24072771-24072858,24072960-24073176,24075101-24075974
Length = 392
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/41 (31%), Positives = 16/41 (39%)
Frame = +3
Query: 12 VCCDLLGNCIVKMPKYYCDYCDTYLTHDSPSVRKTHCTGRK 134
+CC G C+ P D C Y SP R+ C K
Sbjct: 65 MCCHDCGGCVPSGPYASKDECPCYRDMVSPKSRRPKCPREK 105
>05_07_0062 +
27423081-27423287,27423372-27423449,27423548-27423597,
27423714-27423767,27423965-27424017,27424101-27424173,
27424718-27424767,27424919-27424987,27425183-27425291,
27425658-27425725,27425982-27426082,27426260-27426412,
27426503-27426570,27426898-27426943,27427027-27427107
Length = 419
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Frame = +3
Query: 27 LGNCIVKMPKYYCDYCDTYLT------HDSPSVRKTHCTGRKHKDNVKFYYQK 167
LG ++++ +CD Y+ +D S+ +T + R HK + +YY +
Sbjct: 193 LGKLMLEVGLMLAHHCDRYVMQQGVGPYDGESLEQTIASSRCHKGRLLYYYPR 245
>12_01_1024 -
10467644-10469274,10469424-10469482,10469820-10470357,
10470975-10471666,10471912-10472062,10473797-10473864,
10473964-10474042,10474763-10474765,10476427-10477255
Length = 1349
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 141 LYVFYLYSEFS*HLASHELNMCHNNH 64
LYV LYS F+ H+ HEL+ + H
Sbjct: 217 LYVAMLYSWFAWHVEDHELHSLNFLH 242
>05_06_0166 +
26093618-26095381,26095820-26096039,26096345-26096674,
26097481-26098029,26098366-26098426,26099737-26099824,
26100240-26100299
Length = 1023
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -1
Query: 149 HIVFMFSTCTVSFPDTWRVMS 87
H VF+ C PDTW V+S
Sbjct: 470 HRVFIVDDCNTLPPDTWSVIS 490
>05_03_0676 -
16853937-16854042,16854605-16854700,16854920-16855089,
16856742-16856825,16857042-16857119,16858053-16858216,
16858345-16858429
Length = 260
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 87 LNMCHNNHNNISAFLLYNSLTDH 19
L M H ++ IS FLLYN+ +H
Sbjct: 154 LTMQHGSYFKISFFLLYNAGNEH 176
>08_01_1026 - 10366534-10368021,10368505-10368525
Length = 502
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 63 CDYCDTYLTHDSPSVRKTHCTGRKHK 140
CD C+ + S +V ++H GRKHK
Sbjct: 242 CDVCN--VKAPSVTVMRSHLAGRKHK 265
>08_01_0314 + 2777971-2778607,2778809-2778885,2778964-2779011
Length = 253
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 129 YLYSEFS*HLASHELNMCHNNHNNISAFLLYNSLTD 22
YL S+ + + S E+ + H NN+ A Y +LTD
Sbjct: 24 YLASKTAPSIFSVEVAVRHEKQNNLKAMRKYVALTD 59
>08_02_0209 + 14321313-14321750
Length = 145
Score = 25.0 bits (52), Expect = 8.6
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -3
Query: 102 LASHELNMCHNN 67
L SH +NMCHN+
Sbjct: 129 LPSHRINMCHNS 140
>04_04_0676 -
27187778-27188316,27188441-27188530,27189249-27189480,
27189569-27189899,27190369-27190591,27190772-27191132
Length = 591
Score = 25.0 bits (52), Expect = 8.6
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = -1
Query: 140 FMFSTCTVSFPDTWRV 93
++ STC ++ PD WR+
Sbjct: 150 YLASTCGITEPDAWRI 165
>03_02_1035 -
13557425-13557721,13557855-13558058,13558143-13558332,
13558450-13558841,13558931-13559023,13559297-13559500,
13559572-13559635,13559760-13559806,13559825-13559971,
13560243-13560335,13560420-13560599,13560993-13561128,
13561216-13561466,13561556-13561669,13561794-13561991,
13562050-13562110,13562921-13563210
Length = 986
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +3
Query: 45 KMPKYYCDYCDTYLTHDSPSVRKT 116
K+ +Y CD L D P VRKT
Sbjct: 207 KITEYLCDPLQRCLKDDDPYVRKT 230
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,488,305
Number of Sequences: 37544
Number of extensions: 66351
Number of successful extensions: 154
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 14,793,348
effective HSP length: 37
effective length of database: 13,404,220
effective search space used: 268084400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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