Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_F19
         (173 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP prot...   106   8e-26
DQ437579-1|ABD96049.1|  575|Anopheles gambiae short neuropeptide...    21   7.0  
AY263176-1|AAP78791.1|  705|Anopheles gambiae TmcB-like protein ...    21   7.0  
AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    21   7.0  
AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript...    20   9.2  

>AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP
           protein.
          Length = 151

 Score =  106 bits (255), Expect = 8e-26
 Identities = 42/42 (100%), Positives = 42/42 (100%)
 Frame = +3

Query: 48  MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWM 173
           MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWM
Sbjct: 1   MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWM 42


>DQ437579-1|ABD96049.1|  575|Anopheles gambiae short neuropeptide F
           receptor protein.
          Length = 575

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 6/18 (33%), Positives = 15/18 (83%)
 Frame = -3

Query: 87  LNMCHNNHNNISAFLLYN 34
           +NMC++ +++I+++  YN
Sbjct: 342 VNMCNDFNSDINSWRFYN 359


>AY263176-1|AAP78791.1|  705|Anopheles gambiae TmcB-like protein
           protein.
          Length = 705

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 54  KYYCDYCDTYLTHDSP 101
           +YY D C T+   +SP
Sbjct: 665 RYYTDPCATWRYEESP 680


>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1099

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 134 FSTCTVSFPDTWRV 93
           F+T T++ P TW V
Sbjct: 179 FATPTIAQPGTWNV 192


>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -1

Query: 134 FSTCTVSFPDTWRV 93
           F+T +++ P+TW V
Sbjct: 198 FATPSIARPETWEV 211


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,763
Number of Sequences: 2352
Number of extensions: 3492
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 563,979
effective HSP length: 36
effective length of database: 479,307
effective search space used: 10065447
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)