Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_F19
(173 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X12517-1|CAA31037.1| 159|Homo sapiens protein ( Human mRNA for ... 98 4e-21
BC121083-1|AAI21084.1| 159|Homo sapiens small nuclear ribonucle... 98 4e-21
BC121082-1|AAI21083.1| 159|Homo sapiens small nuclear ribonucle... 98 4e-21
AL139100-2|CAI20350.1| 159|Homo sapiens small nuclear ribonucle... 98 4e-21
AK223098-1|BAD96818.1| 159|Homo sapiens small nuclear ribonucle... 95 5e-20
AL139100-3|CAI20351.1| 180|Homo sapiens small nuclear ribonucle... 92 3e-19
BC108310-1|AAI08311.1| 376|Homo sapiens WW domain binding prote... 38 0.006
BC104879-1|AAI04880.1| 376|Homo sapiens WW domain-containing bi... 38 0.006
AL157877-5|CAI13223.1| 376|Homo sapiens WW domain binding prote... 38 0.006
AF071185-1|AAC34811.1| 376|Homo sapiens formin binding protein ... 38 0.006
M18465-1|AAA36618.1| 106|Homo sapiens protein ( Human U1 small ... 35 0.041
CR457393-1|CAG33674.1| 170|Homo sapiens LOC55954 protein. 32 0.29
CR456353-1|CAG30239.1| 170|Homo sapiens Em:AC005529.5 protein. 32 0.29
BC009717-1|AAH09717.1| 170|Homo sapiens zinc finger, matrin typ... 32 0.29
AL160311-1|CAB77284.1| 170|Homo sapiens hypothetical protein pr... 32 0.29
Z69304-1|CAI42009.1| 638|Homo sapiens zinc finger, matrin type ... 32 0.38
Z68868-2|CAI42751.1| 638|Homo sapiens zinc finger, matrin type ... 32 0.38
BC019598-1|AAH19598.1| 153|Homo sapiens ZMAT4 protein protein. 29 2.7
AK023904-1|BAB14719.1| 229|Homo sapiens protein ( Homo sapiens ... 29 2.7
BC092423-1|AAH92423.1| 471|Homo sapiens zinc finger protein 533... 28 4.7
BC038422-1|AAH38422.1| 369|Homo sapiens ZNF533 protein protein. 28 4.7
AK131432-1|BAD18578.1| 421|Homo sapiens protein ( Homo sapiens ... 28 4.7
AK096822-1|BAC04870.1| 395|Homo sapiens protein ( Homo sapiens ... 28 4.7
AK057999-1|BAB71629.1| 369|Homo sapiens protein ( Homo sapiens ... 28 4.7
AC068042-1|AAY24322.1| 339|Homo sapiens unknown protein. 28 4.7
AB051516-1|BAB21820.1| 1020|Homo sapiens KIAA1729 protein protein. 27 8.2
>X12517-1|CAA31037.1| 159|Homo sapiens protein ( Human mRNA for U1
small nuclear RNP-specific C protein. ).
Length = 159
Score = 98.3 bits (234), Expect = 4e-21
Identities = 38/42 (90%), Positives = 41/42 (97%)
Frame = +3
Query: 48 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWM 173
MPK+YCDYCDTYLTHDSPSVRKTHC+GRKHK+NVK YYQKWM
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWM 42
>BC121083-1|AAI21084.1| 159|Homo sapiens small nuclear
ribonucleoprotein polypeptide C protein.
Length = 159
Score = 98.3 bits (234), Expect = 4e-21
Identities = 38/42 (90%), Positives = 41/42 (97%)
Frame = +3
Query: 48 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWM 173
MPK+YCDYCDTYLTHDSPSVRKTHC+GRKHK+NVK YYQKWM
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWM 42
>BC121082-1|AAI21083.1| 159|Homo sapiens small nuclear
ribonucleoprotein polypeptide C protein.
Length = 159
Score = 98.3 bits (234), Expect = 4e-21
Identities = 38/42 (90%), Positives = 41/42 (97%)
Frame = +3
Query: 48 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWM 173
MPK+YCDYCDTYLTHDSPSVRKTHC+GRKHK+NVK YYQKWM
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWM 42
>AL139100-2|CAI20350.1| 159|Homo sapiens small nuclear
ribonucleoprotein polypeptide C protein.
Length = 159
Score = 98.3 bits (234), Expect = 4e-21
Identities = 38/42 (90%), Positives = 41/42 (97%)
Frame = +3
Query: 48 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWM 173
MPK+YCDYCDTYLTHDSPSVRKTHC+GRKHK+NVK YYQKWM
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWM 42
>AK223098-1|BAD96818.1| 159|Homo sapiens small nuclear
ribonucleoprotein polypeptide C variant protein.
Length = 159
Score = 94.7 bits (225), Expect = 5e-20
Identities = 36/42 (85%), Positives = 40/42 (95%)
Frame = +3
Query: 48 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWM 173
MPK+YCDYCDTYLTHDSPSVRKTHC+GRKH++N K YYQKWM
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHRENEKDYYQKWM 42
>AL139100-3|CAI20351.1| 180|Homo sapiens small nuclear
ribonucleoprotein polypeptide C protein.
Length = 180
Score = 92.3 bits (219), Expect = 3e-19
Identities = 35/40 (87%), Positives = 39/40 (97%)
Frame = +3
Query: 54 KYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWM 173
++YCDYCDTYLTHDSPSVRKTHC+GRKHK+NVK YYQKWM
Sbjct: 24 RFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWM 63
>BC108310-1|AAI08311.1| 376|Homo sapiens WW domain binding protein
4 (formin binding protein 21) protein.
Length = 376
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +3
Query: 51 PKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNV 149
PK +CDYC ++ + PSV + H G+ HK+NV
Sbjct: 9 PKKFCDYCKCWIADNRPSV-EFHERGKNHKENV 40
>BC104879-1|AAI04880.1| 376|Homo sapiens WW domain-containing
binding protein 4 protein.
Length = 376
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +3
Query: 51 PKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNV 149
PK +CDYC ++ + PSV + H G+ HK+NV
Sbjct: 9 PKKFCDYCKCWIADNRPSV-EFHERGKNHKENV 40
>AL157877-5|CAI13223.1| 376|Homo sapiens WW domain binding protein
4 (formin binding protein 21) protein.
Length = 376
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +3
Query: 51 PKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNV 149
PK +CDYC ++ + PSV + H G+ HK+NV
Sbjct: 9 PKKFCDYCKCWIADNRPSV-EFHERGKNHKENV 40
>AF071185-1|AAC34811.1| 376|Homo sapiens formin binding protein 21
protein.
Length = 376
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +3
Query: 51 PKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNV 149
PK +CDYC ++ + PSV + H G+ HK+NV
Sbjct: 9 PKKFCDYCKCWIADNRPSV-EFHERGKNHKENV 40
>M18465-1|AAA36618.1| 106|Homo sapiens protein ( Human U1 small
nuclear ribonucleoprotein mRNA, 3' end. ).
Length = 106
Score = 35.1 bits (77), Expect = 0.041
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +3
Query: 129 RKHKDNVKFYYQKWM 173
RKHK+NVK YYQKWM
Sbjct: 4 RKHKENVKDYYQKWM 18
>CR457393-1|CAG33674.1| 170|Homo sapiens LOC55954 protein.
Length = 170
Score = 32.3 bits (70), Expect = 0.29
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 54 KYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYY 161
+Y+CDYCD D+ RK H G +H K +Y
Sbjct: 4 RYFCDYCDRSF-QDNLHNRKKHLNGLQHLKAKKVWY 38
>CR456353-1|CAG30239.1| 170|Homo sapiens Em:AC005529.5 protein.
Length = 170
Score = 32.3 bits (70), Expect = 0.29
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 54 KYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYY 161
+Y+CDYCD D+ RK H G +H K +Y
Sbjct: 4 RYFCDYCDRSF-QDNLHNRKKHLNGLQHLKAKKVWY 38
>BC009717-1|AAH09717.1| 170|Homo sapiens zinc finger, matrin type 5
protein.
Length = 170
Score = 32.3 bits (70), Expect = 0.29
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 54 KYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYY 161
+Y+CDYCD D+ RK H G +H K +Y
Sbjct: 4 RYFCDYCDRSF-QDNLHNRKKHLNGLQHLKAKKVWY 38
>AL160311-1|CAB77284.1| 170|Homo sapiens hypothetical protein
protein.
Length = 170
Score = 32.3 bits (70), Expect = 0.29
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 54 KYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYY 161
+Y+CDYCD D+ RK H G +H K +Y
Sbjct: 4 RYFCDYCDRSF-QDNLHNRKKHLNGLQHLKAKKVWY 38
>Z69304-1|CAI42009.1| 638|Homo sapiens zinc finger, matrin type 1
protein.
Length = 638
Score = 31.9 bits (69), Expect = 0.38
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 60 YCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQ 164
+C C L +S + +H G KH NV FY+Q
Sbjct: 57 FCQVCGVMLQFESQRI--SHYEGEKHAQNVSFYFQ 89
>Z68868-2|CAI42751.1| 638|Homo sapiens zinc finger, matrin type 1
protein.
Length = 638
Score = 31.9 bits (69), Expect = 0.38
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 60 YCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQ 164
+C C L +S + +H G KH NV FY+Q
Sbjct: 57 FCQVCGVMLQFESQRI--SHYEGEKHAQNVSFYFQ 89
>BC019598-1|AAH19598.1| 153|Homo sapiens ZMAT4 protein protein.
Length = 153
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = +3
Query: 60 YCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYY 161
YC C L S S R H RKH V+ YY
Sbjct: 15 YCKVCSAQLI--SESQRVAHYESRKHASKVRLYY 46
>AK023904-1|BAB14719.1| 229|Homo sapiens protein ( Homo sapiens
cDNA FLJ13842 fis, clone THYRO1000793. ).
Length = 229
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = +3
Query: 60 YCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYY 161
YC C L S S R H RKH V+ YY
Sbjct: 15 YCKVCSAQLI--SESQRVAHYESRKHASKVRLYY 46
>BC092423-1|AAH92423.1| 471|Homo sapiens zinc finger protein 533
protein.
Length = 471
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 57 YYCDYCDTYLTHDSPSVRKTHCTGRKHKDNV 149
++C+ CD ++ +S K H + R+HKD V
Sbjct: 348 FHCEICDVHV--NSEIQLKQHISSRRHKDRV 376
>BC038422-1|AAH38422.1| 369|Homo sapiens ZNF533 protein protein.
Length = 369
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 57 YYCDYCDTYLTHDSPSVRKTHCTGRKHKDNV 149
++C+ CD ++ +S K H + R+HKD V
Sbjct: 246 FHCEICDVHV--NSEIQLKQHISSRRHKDRV 274
>AK131432-1|BAD18578.1| 421|Homo sapiens protein ( Homo sapiens
cDNA FLJ16557 fis, clone SYNOV2021953, moderately
similar to Mus musculus zinc finger protein 385
(Zfp385). ).
Length = 421
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 57 YYCDYCDTYLTHDSPSVRKTHCTGRKHKDNV 149
++C+ CD ++ +S K H + R+HKD V
Sbjct: 363 FHCEICDVHV--NSEIQLKQHISSRRHKDRV 391
>AK096822-1|BAC04870.1| 395|Homo sapiens protein ( Homo sapiens
cDNA FLJ39503 fis, clone PROST2017128, moderately
similar to Hematopoietic zinc finger. ).
Length = 395
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 57 YYCDYCDTYLTHDSPSVRKTHCTGRKHKDNV 149
++C+ CD ++ +S K H + R+HKD V
Sbjct: 272 FHCEICDVHV--NSEIQLKQHISSRRHKDRV 300
>AK057999-1|BAB71629.1| 369|Homo sapiens protein ( Homo sapiens
cDNA FLJ25270 fis, clone STM05566. ).
Length = 369
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 57 YYCDYCDTYLTHDSPSVRKTHCTGRKHKDNV 149
++C+ CD ++ +S K H + R+HKD V
Sbjct: 246 FHCEICDVHV--NSEIQLKQHISSRRHKDRV 274
>AC068042-1|AAY24322.1| 339|Homo sapiens unknown protein.
Length = 339
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 57 YYCDYCDTYLTHDSPSVRKTHCTGRKHKDNV 149
++C+ CD ++ +S K H + R+HKD V
Sbjct: 216 FHCEICDVHV--NSEIQLKQHISSRRHKDRV 244
>AB051516-1|BAB21820.1| 1020|Homo sapiens KIAA1729 protein protein.
Length = 1020
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -3
Query: 150 SHCLYVFYLYSEFS*HLASH 91
SHC Y+ Y EF HL H
Sbjct: 111 SHCSYISYTKGEFQRHLVKH 130
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,689,878
Number of Sequences: 237096
Number of extensions: 440017
Number of successful extensions: 4810
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 4800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4810
length of database: 76,859,062
effective HSP length: 37
effective length of database: 68,086,510
effective search space used: 1361730200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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