Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_F19
         (173 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U52002-6|AAB37732.1|  142|Caenorhabditis elegans Hypothetical pr...    92   4e-20
Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical pr...    27   1.3  
Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical pr...    27   1.3  
Z77653-2|CAB01125.3|  383|Caenorhabditis elegans Hypothetical pr...    27   1.8  
Z96102-1|CAE17867.1|  220|Caenorhabditis elegans Hypothetical pr...    27   2.3  
Z78060-2|CAB01490.1|  114|Caenorhabditis elegans Hypothetical pr...    25   5.4  
AC006696-9|AAF39992.1|  111|Caenorhabditis elegans Hypothetical ...    25   5.4  
Z81078-5|CAB03078.2|  722|Caenorhabditis elegans Hypothetical pr...    25   7.2  
Z75535-4|CAA99828.2|  722|Caenorhabditis elegans Hypothetical pr...    25   7.2  
AF101318-1|AAC69342.2|  356|Caenorhabditis elegans Hypothetical ...    25   7.2  
AC024817-58|AAF59562.4|  536|Caenorhabditis elegans Hypothetical...    25   7.2  
AL034488-8|CAE46690.1|  395|Caenorhabditis elegans Hypothetical ...    25   9.5  
AL034488-7|CAA22452.1|  396|Caenorhabditis elegans Hypothetical ...    25   9.5  

>U52002-6|AAB37732.1|  142|Caenorhabditis elegans Hypothetical
           protein F08B4.7 protein.
          Length = 142

 Score = 92.3 bits (219), Expect = 4e-20
 Identities = 36/42 (85%), Positives = 39/42 (92%)
 Frame = +3

Query: 48  MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWM 173
           MPKYYCDYCDT+LTHDSPSVRKTH  GRKHKDNV+ +YQKWM
Sbjct: 1   MPKYYCDYCDTFLTHDSPSVRKTHNGGRKHKDNVRMFYQKWM 42


>Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical
           protein ZC116.3 protein.
          Length = 3871

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
 Frame = +3

Query: 18  CDLLGNCIVKMPKYYCDYCDTYLTHDSPS-VRKTHCTGRK-HK 140
           C  L  C   +  YYCD C T  + D  + V+   C   K HK
Sbjct: 262 CSPLSKCHNTLGSYYCDSCPTGYSGDGGNCVKDDSCVKNKCHK 304


>Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical
           protein ZC116.3 protein.
          Length = 3871

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
 Frame = +3

Query: 18  CDLLGNCIVKMPKYYCDYCDTYLTHDSPS-VRKTHCTGRK-HK 140
           C  L  C   +  YYCD C T  + D  + V+   C   K HK
Sbjct: 262 CSPLSKCHNTLGSYYCDSCPTGYSGDGGNCVKDDSCVKNKCHK 304


>Z77653-2|CAB01125.3|  383|Caenorhabditis elegans Hypothetical
           protein C13C12.2 protein.
          Length = 383

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +3

Query: 18  CDLLGNCIVKMPKYYCDYCDTYLTHDSPSVRKTHCTGR 131
           CD     I +  + YC YCD  L H S +V     +GR
Sbjct: 119 CDDFSGVIERNGRTYCRYCD--LCHVSQAVENELASGR 154


>Z96102-1|CAE17867.1|  220|Caenorhabditis elegans Hypothetical
           protein H39E23.2 protein.
          Length = 220

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
 Frame = +3

Query: 3   TRVVCCDL---LGNCIVKMPKYYCD--YCDTYLTHDSPSVRKTHCTGR-KHKD 143
           TR   C++   LGNC++   K YC+  +   +  H    +    C GR K KD
Sbjct: 148 TRKWTCEIAQDLGNCLLPDVKNYCEPNFLPIFKEHQDSRMFNLGCDGRLKFKD 200


>Z78060-2|CAB01490.1|  114|Caenorhabditis elegans Hypothetical
           protein C34D1.2 protein.
          Length = 114

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +3

Query: 57  YYCDYCDTYLTHDSPSVRKTH 119
           YYC  C   L HD P  RK H
Sbjct: 41  YYCQRC---LNHDVPRPRKNH 58


>AC006696-9|AAF39992.1|  111|Caenorhabditis elegans Hypothetical
           protein W08E12.9 protein.
          Length = 111

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 113 FPDTWRVMS*ICVTIITIIFRHFYY 39
           FP  ++ +S I  T+ T+IF  FYY
Sbjct: 22  FPKFFQKVSIISYTVETLIFSKFYY 46


>Z81078-5|CAB03078.2|  722|Caenorhabditis elegans Hypothetical
           protein F14B4.1 protein.
          Length = 722

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 18  CDLLGNCIVKMPKYY 62
           CD  GNC  ++P YY
Sbjct: 250 CDTQGNCKCRLPGYY 264


>Z75535-4|CAA99828.2|  722|Caenorhabditis elegans Hypothetical
           protein F14B4.1 protein.
          Length = 722

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 18  CDLLGNCIVKMPKYY 62
           CD  GNC  ++P YY
Sbjct: 250 CDTQGNCKCRLPGYY 264


>AF101318-1|AAC69342.2|  356|Caenorhabditis elegans Hypothetical
           protein Y73C8C.4 protein.
          Length = 356

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 57  YYCDYCDTYLTHDSPSVRKTHCTGRK 134
           Y+C +   +LT D  S RK++ +G +
Sbjct: 127 YFCSFGINFLTKDPDSRRKSYVSGEE 152


>AC024817-58|AAF59562.4|  536|Caenorhabditis elegans Hypothetical
           protein Y54G2A.29 protein.
          Length = 536

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 162 DSRISHCLYVFYLYSEFS*HLASHELNMC 76
           DS + +C+Y    +S F  HL S   N+C
Sbjct: 433 DSHVKYCVYRRREHSNFLEHLVSLADNLC 461


>AL034488-8|CAE46690.1|  395|Caenorhabditis elegans Hypothetical
           protein Y54G11A.8b protein.
          Length = 395

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 6/55 (10%)
 Frame = +3

Query: 27  LGNCIVKMPKYYCDYCDTYLTHDSPS------VRKTHCTGRKHKDNVKFYYQKWM 173
           +  C   +P YYC+Y ++ L H           RK     R   D V+ Y Q ++
Sbjct: 324 VNECAHMLPGYYCNYAES-LFHTGQKNEALEFARKAVQMSRSGDDRVRHYTQNFL 377


>AL034488-7|CAA22452.1|  396|Caenorhabditis elegans Hypothetical
           protein Y54G11A.8a protein.
          Length = 396

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 6/55 (10%)
 Frame = +3

Query: 27  LGNCIVKMPKYYCDYCDTYLTHDSPS------VRKTHCTGRKHKDNVKFYYQKWM 173
           +  C   +P YYC+Y ++ L H           RK     R   D V+ Y Q ++
Sbjct: 325 VNECAHMLPGYYCNYAES-LFHTGQKNEALEFARKAVQMSRSGDDRVRHYTQNFL 378


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,267,189
Number of Sequences: 27780
Number of extensions: 73301
Number of successful extensions: 237
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 12,740,198
effective HSP length: 38
effective length of database: 11,684,558
effective search space used: 222006602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)