Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_F18
         (240 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27 |Schizo...    25   1.3  
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    24   3.1  
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    23   4.1  
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    23   5.4  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    23   7.1  
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce...    23   7.1  
SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|...    22   9.4  

>SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 413

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = -3

Query: 184 IIHDLS--HSKTYVDYKMTLENITYTQ-LK*IKTIEMLTNFKVSL 59
           ++H ++  HSK  +   + LENI  TQ    IKTI+   N+  +L
Sbjct: 215 LVHTVAYLHSKCLIHRDLKLENILLTQPYNVIKTIDNWKNYPNAL 259


>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -3

Query: 232 LKGSKSF-SCECWYIIIIIHDLSH 164
           L GSK   SC C+++  + HD ++
Sbjct: 268 LTGSKFLASCSCFFLSALFHDFAY 291


>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 166 HSKTYVDYKMTLENITYTQLK*IKTIEMLTNFKVSLKPMKF 44
           HSK  V  +M   ++ Y  L  +KTI+   +F + L  +KF
Sbjct: 357 HSKNLVSERMLYLSLMYKSLVDLKTID---SFSLKLLFLKF 394


>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 169 SHSKTYVDYKMTLENITY 116
           SH+ T+ DY+ ++EN  Y
Sbjct: 213 SHNMTFHDYEPSIENKNY 230


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 166 HSKTYVDYKMTLENITYTQL 107
           H+ T   YK +L+N T++QL
Sbjct: 142 HNFTLTLYKFSLDNQTFSQL 161


>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 227 GQQKFLLRVLVHHHYHP*FVSL*NIRRL 144
           G  K   R++VH + H  F+SL  I+ L
Sbjct: 287 GMLKVDTRLVVHAYCHSDFISLKRIKEL 314


>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = -2

Query: 44  LFIIFLDFMIYY 9
           LF++F DF+IY+
Sbjct: 157 LFLLFSDFLIYW 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 806,611
Number of Sequences: 5004
Number of extensions: 11066
Number of successful extensions: 34
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 41344840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)