Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_F18
         (240 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0128 - 12848227-12848619,12848699-12848827,12849108-128492...    28   1.2  
12_01_1033 + 10629897-10632311,10633874-10633879                       26   4.9  
12_01_0513 + 4059586-4059620,4060155-4060365,4060470-4060724,406...    25   8.5  
03_04_0147 + 17690840-17691687,17692328-17692532,17693048-176931...    25   8.5  
01_04_0085 - 15866060-15866440,15866477-15866533,15866765-158669...    25   8.5  

>08_02_0128 -
           12848227-12848619,12848699-12848827,12849108-12849279,
           12849336-12849488,12850017-12850271,12850846-12851000,
           12853319-12853456,12853545-12853715,12853878-12854063,
           12854169-12854290,12855617-12855752,12856108-12856203,
           12856294-12856356,12856846-12856993,12857324-12857514,
           12857916-12857989,12858039-12858171,12858299-12858460,
           12861649-12861745,12861866-12861962,12863994-12864141
          Length = 1072

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 9/22 (40%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = -3

Query: 199 WYIIIIIHDLSHSKTYV-DYKM 137
           WY+++ +HD SH++ Y+  Y+M
Sbjct: 461 WYLVVELHDPSHARRYLCTYEM 482


>12_01_1033 + 10629897-10632311,10633874-10633879
          Length = 806

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 113 CVSDIF*RHFIVDVCFRVRQIMDDNDDVPTLAGETFAA 226
           C+ ++  RH   D+C  +  ++ D  +VP LAG   AA
Sbjct: 106 CLGNLTGRH-CADLCHLLGSLLLDERNVPRLAGTAAAA 142


>12_01_0513 +
           4059586-4059620,4060155-4060365,4060470-4060724,
           4060801-4060865,4061120-4061194,4061440-4061575,
           4061661-4061753,4061838-4061983,4062074-4062174,
           4062259-4062434,4063823-4063900,4063991-4064199,
           4064286-4064378,4064888-4064971,4065405-4065506,
           4065591-4065678,4065756-4065809,4065869-4066075,
           4066970-4067026,4067171-4067225,4067737-4067813,
           4067941-4068007,4068383-4068444,4068541-4068603,
           4068702-4068830
          Length = 905

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 157 TYVDYKMTLENITYTQLK 104
           T ++YK+T EN+ Y + K
Sbjct: 403 TLINYKVTFENLAYVEAK 420


>03_04_0147 +
           17690840-17691687,17692328-17692532,17693048-17693199,
           17693306-17693597,17693807-17693962,17694561-17694764,
           17694875-17694987,17695078-17695192,17695293-17695382,
           17695463-17695666,17695764-17695859,17696094-17696216,
           17696308-17696400,17696477-17696641,17697179-17697268,
           17697356-17697520
          Length = 1036

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -3

Query: 229 KGSKSFSCECWYIIIIIHDLSHSKTYVDYKMTLENITYTQ 110
           K + SF CEC+++   + +L   K   D+K   +++   Q
Sbjct: 466 KENFSFICECFFMTARVLNLGLMKALSDFKHIAQDLARCQ 505


>01_04_0085 -
           15866060-15866440,15866477-15866533,15866765-15866923,
           15866991-15867186,15867358-15867662
          Length = 365

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +2

Query: 134 RHFIVDVCFRVRQIMDDNDDVPTLAGETFAALQE 235
           R F V V F V   MD N D+P + G  F +  E
Sbjct: 262 RDFFVHVDFVVLD-MDSNKDMPLILGHPFLSTAE 294


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,643,616
Number of Sequences: 37544
Number of extensions: 60670
Number of successful extensions: 138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 14,793,348
effective HSP length: 58
effective length of database: 12,615,796
effective search space used: 264931716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)