Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_F18
         (240 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73428-4|CAH60777.1|  218|Caenorhabditis elegans Hypothetical pr...    28   0.77 
Z68751-8|CAA92978.1| 1474|Caenorhabditis elegans Hypothetical pr...    26   4.1  
Z68341-5|CAA92768.1| 1474|Caenorhabditis elegans Hypothetical pr...    26   4.1  
AF230280-1|AAG16655.1| 1474|Caenorhabditis elegans SWI2/SNF2-lik...    26   4.1  
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-...    25   5.4  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    25   7.2  
AL032634-1|CAC35856.2| 1195|Caenorhabditis elegans Hypothetical ...    25   7.2  
Z74042-5|CAA98530.1|  200|Caenorhabditis elegans Hypothetical pr...    25   9.5  
AF125462-4|AAD12859.1| 1219|Caenorhabditis elegans Heavy chain, ...    25   9.5  
AF125462-3|AAT68888.1| 1144|Caenorhabditis elegans Heavy chain, ...    25   9.5  

>Z73428-4|CAH60777.1|  218|Caenorhabditis elegans Hypothetical
           protein M142.8 protein.
          Length = 218

 Score = 28.3 bits (60), Expect = 0.77
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 176 MDDNDDVPTLAGETFAALQEF 238
           M D DD+P L+ +T AAL  F
Sbjct: 1   MSDTDDIPQLSADTLAALSMF 21


>Z68751-8|CAA92978.1| 1474|Caenorhabditis elegans Hypothetical
           protein F01G4.1 protein.
          Length = 1474

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +3

Query: 153 YVLE*DKSWMIMMMYQHSQEKLLLPFKSS 239
           YV++ D+S +  ++Y+H Q+ LLL  K S
Sbjct: 773 YVIKCDQSALQKVIYRHMQKGLLLDAKMS 801


>Z68341-5|CAA92768.1| 1474|Caenorhabditis elegans Hypothetical
           protein F01G4.1 protein.
          Length = 1474

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +3

Query: 153 YVLE*DKSWMIMMMYQHSQEKLLLPFKSS 239
           YV++ D+S +  ++Y+H Q+ LLL  K S
Sbjct: 773 YVIKCDQSALQKVIYRHMQKGLLLDAKMS 801


>AF230280-1|AAG16655.1| 1474|Caenorhabditis elegans SWI2/SNF2-like
           protein protein.
          Length = 1474

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +3

Query: 153 YVLE*DKSWMIMMMYQHSQEKLLLPFKSS 239
           YV++ D+S +  ++Y+H Q+ LLL  K S
Sbjct: 773 YVIKCDQSALQKVIYRHMQKGLLLDAKMS 801


>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
            x-hybridizingprotein 1, isoform a protein.
          Length = 1876

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -3

Query: 196  YIIIIIHDLSHSKTYVDYKMTLENITYTQLK-*IKTIEMLTNFKVSLK 56
            ++++   D  + KT+ DYK   EN      K  IK  + +    +SLK
Sbjct: 1506 FVVLTFDDAVNGKTFSDYKKLFENDVLKSFKFKIKNFKKVIPNTLSLK 1553


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 197 VHHHYHP*FVSL*NIRRL 144
           VHHH+H   VSL  I++L
Sbjct: 3   VHHHHHTHHVSLHKIKKL 20


>AL032634-1|CAC35856.2| 1195|Caenorhabditis elegans Hypothetical
           protein Y39G8C.1 protein.
          Length = 1195

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 202 CWYIIIIIHDLSHSKTYVDYKMTLENITYTQLK 104
           CW   I      H KTY   K+  +NI+  QL+
Sbjct: 483 CWTKTINNQFKRHKKTYYSDKLRYKNISKQQLR 515


>Z74042-5|CAA98530.1|  200|Caenorhabditis elegans Hypothetical
           protein T11F9.6 protein.
          Length = 200

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/38 (23%), Positives = 19/38 (50%)
 Frame = -3

Query: 217 SFSCECWYIIIIIHDLSHSKTYVDYKMTLENITYTQLK 104
           SF+ +C+   + +H+L HS  ++      +   Y + K
Sbjct: 125 SFNSDCYSAGVAVHELIHSLGFIHAHQRSDRDQYLEFK 162


>AF125462-4|AAD12859.1| 1219|Caenorhabditis elegans Heavy chain,
           unconventional myosinprotein 8, isoform a protein.
          Length = 1219

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +2

Query: 134 RHFIVDVCFRVRQIMDDNDDV 196
           RH+   VC+  +  ++ NDD+
Sbjct: 606 RHYAGSVCYETKHFVEKNDDL 626


>AF125462-3|AAT68888.1| 1144|Caenorhabditis elegans Heavy chain,
           unconventional myosinprotein 8, isoform b protein.
          Length = 1144

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +2

Query: 134 RHFIVDVCFRVRQIMDDNDDV 196
           RH+   VC+  +  ++ NDD+
Sbjct: 606 RHYAGSVCYETKHFVEKNDDL 626


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,340,861
Number of Sequences: 27780
Number of extensions: 60890
Number of successful extensions: 123
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 12,740,198
effective HSP length: 59
effective length of database: 11,101,178
effective search space used: 222023560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)