Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_F17
(298 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 146 8e-37
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 145 1e-36
SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit L1... 28 0.34
SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr 1||... 25 1.8
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar... 25 2.4
SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa... 25 2.4
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 3.1
SPBC146.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 3.1
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 24 4.2
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 24 4.2
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe... 24 5.5
SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15 |Schizo... 24 5.5
SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulat... 23 7.3
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 23 7.3
SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo... 23 9.6
SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi... 23 9.6
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 146 bits (353), Expect = 8e-37
Identities = 65/92 (70%), Positives = 77/92 (83%)
Frame = +1
Query: 22 GRDQFHIRMRLHRFHVIRVNKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRS 201
G+D FH+R+R H FHV+R+NKMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSVR+
Sbjct: 81 GKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQVLMSVRT 140
Query: 202 SDRWKAQVIEALRRAKFKFPGRQKIYVSKKWG 297
D +A IEALRR ++KFPG+Q+I VSKKWG
Sbjct: 141 KDSSRATAIEALRRCQYKFPGQQRIIVSKKWG 172
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 145 bits (352), Expect = 1e-36
Identities = 65/92 (70%), Positives = 77/92 (83%)
Frame = +1
Query: 22 GRDQFHIRMRLHRFHVIRVNKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRS 201
G+D FH+R+R H FHV+R+NKMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSVR+
Sbjct: 81 GKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQILMSVRT 140
Query: 202 SDRWKAQVIEALRRAKFKFPGRQKIYVSKKWG 297
D +A IEALRR ++KFPG+Q+I VSKKWG
Sbjct: 141 KDSSRATAIEALRRCQYKFPGQQRIIVSKKWG 172
>SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit
L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 27.9 bits (59), Expect = 0.34
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +1
Query: 115 QTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSK 288
+T M G + AR+ IG+ + + K AL++A F PG+ +I V +
Sbjct: 124 ETRMGKGKGAFEYWAARIPIGRVLFEIGGDGMRKELAEHALKQAAFHLPGKYEIIVKQ 181
>SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 224
Score = 25.4 bits (53), Expect = 1.8
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -3
Query: 155 VPWGFPNAPRIPV 117
+ W FPNAP IPV
Sbjct: 46 IKWIFPNAPSIPV 58
>SPAC22E12.17c |glo3||ARF GTPase activating
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 486
Score = 25.0 bits (52), Expect = 2.4
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -2
Query: 192 RHNGLSNTHTRYCALGFPERTTHPSLEPISSSA 94
RH G+S +++ C L + +T LE + S A
Sbjct: 94 RHGGVSLLNSKDCRLKYSSKTAKQYLEKLKSLA 126
>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
Nse6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 522
Score = 25.0 bits (52), Expect = 2.4
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -2
Query: 105 SSSARQHFIDADDMEAV*SHPDVELISTLVP 13
SS H +D+DD E + PD IS+LVP
Sbjct: 16 SSKLIDHILDSDDSEELDELPD---ISSLVP 43
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 24.6 bits (51), Expect = 3.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 28 DQFHIRMRLHRFHVIRVNKMLSCAGADRLQTGMR 129
D H+RM ++ FH +N MLS + D + MR
Sbjct: 860 DNSHLRMSINSFH---INDMLSKSSRDNNRQLMR 890
>SPBC146.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 263
Score = 24.6 bits (51), Expect = 3.1
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = -2
Query: 297 APLLRYIDLLATRELELSTTQSLNDLCLPTVT*AYRHNGLSNTHTRYCALGFPERTTHPS 118
+PLL I L R + S ++ LN + + GLS+ H+RY + P R +
Sbjct: 92 SPLLSPISPLKLRFHKYSVSKQLNSV-------GKQGFGLSSNHSRYASPSSPARLARGA 144
Query: 117 L-EPISSS 97
L E +S+S
Sbjct: 145 LGEELSNS 152
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 24.2 bits (50), Expect = 4.2
Identities = 9/32 (28%), Positives = 16/32 (50%)
Frame = -2
Query: 165 TRYCALGFPERTTHPSLEPISSSARQHFIDAD 70
T + +P+R T PSL+ + + H + D
Sbjct: 226 THFAPYYYPQRATSPSLKQVPTYLGTHVLQQD 257
Score = 23.8 bits (49), Expect = 5.5
Identities = 14/44 (31%), Positives = 16/44 (36%)
Frame = -2
Query: 213 PTVT*AYRHNGLSNTHTRYCALGFPERTTHPSLEPISSSARQHF 82
P V R LS+ H R C P + HP P HF
Sbjct: 141 PQVQSYCRPEPLSSNHVRSCPPFPPTQHHHPHTRPPHHPPHPHF 184
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 24.2 bits (50), Expect = 4.2
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -2
Query: 276 DLLATRELELSTTQSLNDLCLPTVT*AYRHNGLSNTHT-RYCALGFPE 136
DL+A R+ S +S+N + LP V+ A + SNT++ Y G+ E
Sbjct: 2766 DLIAWRQ---SVFKSINKVFLPLVSIAQQSTNKSNTNSVSYLYRGYHE 2810
>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 23.8 bits (49), Expect = 5.5
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = -2
Query: 189 HNGLSNTHTRYCALGFPERTTHPSLEPISSSARQHFID 76
HNG+SN +T + +H +L Q FID
Sbjct: 94 HNGISNAYTASNNTNYYFEVSHDALYGALDRFAQFFID 131
>SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 534
Score = 23.8 bits (49), Expect = 5.5
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -2
Query: 150 LGFPERTTHPSLEPISSSARQHFID 76
L +P R T P L P R FID
Sbjct: 409 LNYPRRKTTPKLTPEEHEERLCFID 433
>SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulatory
subunit Rpn11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 308
Score = 23.4 bits (48), Expect = 7.3
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = +2
Query: 104 LIGSRLGCVVRSGNPKAQ*RVCVLDSPLCLYAQVTVGRH 220
L G+R+G + P CV S L L + GRH
Sbjct: 8 LQGARMGTGMMGDQPLVDNSECVYISSLALLKMLRHGRH 46
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 23.4 bits (48), Expect = 7.3
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = +1
Query: 55 HRFHVIRVNKMLSCAGADR 111
+R ++++N+ LSC+ ADR
Sbjct: 640 NRLSLLQLNEQLSCSPADR 658
>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 437
Score = 23.0 bits (47), Expect = 9.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 176 PIRTRATVPWGFPNAPRIPVWSLSAPA 96
P+RT + WG+ N IP+W + PA
Sbjct: 81 PLRTLSRW-WGYVNRIEIPLW-MRVPA 105
>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 23.0 bits (47), Expect = 9.6
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = +3
Query: 117 DWDAWCVRETPRHSSACAY 173
++D WCVR S++C +
Sbjct: 169 EFDRWCVRRFSPASNSCCH 187
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,267,064
Number of Sequences: 5004
Number of extensions: 24114
Number of successful extensions: 74
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 73880280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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