Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_F17
(298 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 145 6e-36
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 144 8e-36
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 144 1e-35
02_01_0759 - 5628913-5630870,5631023-5631047 31 0.21
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 30 0.37
09_06_0088 + 20774901-20775491,20776172-20776687 29 0.86
09_06_0320 - 22297579-22297760,22298433-22299358,22299422-222997... 28 1.1
09_06_0319 - 22293869-22293906,22294539-22295808 27 2.0
08_02_0567 + 18769742-18769790,18769928-18771351 27 2.0
06_02_0084 - 11547820-11548773 27 2.0
04_03_1048 - 21998214-21998413,21998507-21998674,21998758-219989... 27 3.5
02_05_0902 + 32620668-32621209,32621847-32622258,32622471-326226... 27 3.5
11_06_0074 - 19821699-19823702 26 6.0
11_05_0015 + 18403367-18403729,18404500-18404565,18405121-184052... 25 8.0
05_05_0146 - 22709115-22709388,22709491-22709705,22709808-22709900 25 8.0
05_04_0285 - 19825106-19826988,19828479-19828529,19830013-19830361 25 8.0
03_05_0010 + 19622430-19622512,19622539-19623082,19623361-196237... 25 8.0
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 145 bits (351), Expect = 6e-36
Identities = 66/95 (69%), Positives = 78/95 (82%)
Frame = +1
Query: 13 RHEGRDQFHIRMRLHRFHVIRVNKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 192
++ G+D FH+R+R+H FHV+R+NKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ ++S
Sbjct: 78 KNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLS 137
Query: 193 VRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWG 297
VR + EALRRAKFKFPGRQKI S+KWG
Sbjct: 138 VRCKESNAKHAEEALRRAKFKFPGRQKIIHSRKWG 172
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 144 bits (350), Expect = 8e-36
Identities = 66/92 (71%), Positives = 75/92 (81%)
Frame = +1
Query: 22 GRDQFHIRMRLHRFHVIRVNKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRS 201
G+D FH+R+R+H FHV+R+NKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ ++SVR
Sbjct: 77 GKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRC 136
Query: 202 SDRWKAQVIEALRRAKFKFPGRQKIYVSKKWG 297
EALRRAKFKFPGRQKI S+KWG
Sbjct: 137 KPNNAVHASEALRRAKFKFPGRQKIIESRKWG 168
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 144 bits (349), Expect = 1e-35
Identities = 65/95 (68%), Positives = 76/95 (80%)
Frame = +1
Query: 13 RHEGRDQFHIRMRLHRFHVIRVNKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 192
+H G+D FH+R+ H +HV+R+NKMLSCAGADRLQTGMRGAFGKP GT ARVRIGQ ++S
Sbjct: 385 KHAGKDAFHLRVCAHPYHVLRINKMLSCAGADRLQTGMRGAFGKPTGTCARVRIGQVLLS 444
Query: 193 VRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWG 297
VR D A EALRRAKFKFPGRQ++ S KWG
Sbjct: 445 VRCRDANAAHAQEALRRAKFKFPGRQRVIFSAKWG 479
>02_01_0759 - 5628913-5630870,5631023-5631047
Length = 660
Score = 30.7 bits (66), Expect = 0.21
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = -3
Query: 206 SLERTDIMGCPIRT---RATVPWGFPNAPRIPVWSLSAPAHDNILLTRMTWKRCSLIRMW 36
SLER DI CP+ T A V G PN + V S S +D + R + CS I+
Sbjct: 233 SLERLDITRCPLITDKGLAAVAHGCPNLLSLTVESCSGVGNDGL---RAIGRSCSKIQAL 289
Query: 35 N 33
N
Sbjct: 290 N 290
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 29.9 bits (64), Expect = 0.37
Identities = 9/31 (29%), Positives = 20/31 (64%)
Frame = -3
Query: 185 MGCPIRTRATVPWGFPNAPRIPVWSLSAPAH 93
+ CP+ + + VP P++P P++S ++P +
Sbjct: 1625 LSCPLTSPSYVPTSLPHSPTSPIYSATSPIY 1655
>09_06_0088 + 20774901-20775491,20776172-20776687
Length = 368
Score = 28.7 bits (61), Expect = 0.86
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = -3
Query: 248 LARRRASMT---CAFQRSLERTDIMGCPIRTRATVPWGFPNAPRIPVWSLSAPAHDNILL 78
L R +S+T C+ ++ T+++GCP+R V G P + R + P D +
Sbjct: 207 LELRESSITPIHCSDEQLAAVTEVLGCPVRLLPIVYLGLPLSVRKLGKADLQPMMDRLAK 266
Query: 77 TRMTWK 60
+ +WK
Sbjct: 267 SLASWK 272
>09_06_0320 - 22297579-22297760,22298433-22299358,22299422-22299747,
22300591-22300660,22301632-22301726,22301917-22302048,
22302154-22302222,22302953-22303051,22303169-22303253,
22303353-22303453,22303660-22303728,22303861-22303901,
22304085-22304303,22304444-22304470,22304562-22304660,
22304898-22305106,22305382-22305485,22305753-22305894,
22305991-22306289,22306508-22306903
Length = 1229
Score = 28.3 bits (60), Expect = 1.1
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 139 GKPQGTVARVRIGQPIMSVRSSD 207
G PQ T+ R+ +G P +S++S+D
Sbjct: 1089 GTPQQTLERLHVGHPTLSLQSND 1111
>09_06_0319 - 22293869-22293906,22294539-22295808
Length = 435
Score = 27.5 bits (58), Expect = 2.0
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 139 GKPQGTVARVRIGQPIMSVRSSD 207
G PQ T+ R+ +G P +S+ S D
Sbjct: 343 GTPQPTLERLHVGHPTLSLHSDD 365
>08_02_0567 + 18769742-18769790,18769928-18771351
Length = 490
Score = 27.5 bits (58), Expect = 2.0
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Frame = +1
Query: 124 MRGAFGKPQG--TVARVRIGQPIMSVRSSDRW-KAQVIEALRRAKFKFPGRQKI 276
MR G+ G A +RI + I + ++++ +AQV+EA RR F+ PGR ++
Sbjct: 24 MRTNGGEQMGGSEAAHIRIDEIIRRLDAAEKEAQAQVVEA-RREIFRVPGRHRL 76
>06_02_0084 - 11547820-11548773
Length = 317
Score = 27.5 bits (58), Expect = 2.0
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = +1
Query: 88 LSCAGADRLQTGMRGAFGK--PQGTVARVRIGQPIMSVRSSDRWK 216
L G DR Q GMRGA P RVR +P R +W+
Sbjct: 133 LGAGGGDRGQLGMRGAADGWWPDWRERRVRWRRPAWRERRGRQWR 177
>04_03_1048 -
21998214-21998413,21998507-21998674,21998758-21998977,
21999571-21999761,21999869-21999962,22000257-22000500,
22001314-22001411,22001509-22001600,22001695-22001809,
22001890-22002036,22003031-22003255
Length = 597
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = -2
Query: 198 AYRHNGLSNTHTRYCALGFPERTTHPSLEPISSSARQH 85
A ++NG H + G+P T P E S+ R H
Sbjct: 125 AIKNNGSLYAHVYFARSGYPVDPTDPEYEQSSAFGRTH 162
>02_05_0902 + 32620668-32621209,32621847-32622258,32622471-32622675,
32622712-32622806,32622945-32623557,32623652-32623820,
32624392-32624749,32625226-32625336,32626207-32626561,
32627262-32627484,32627837-32628058,32628628-32628781
Length = 1152
Score = 26.6 bits (56), Expect = 3.5
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +1
Query: 67 VIRVNKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSS 204
V R +LSC G G+ +PQ AR + I S+RSS
Sbjct: 865 VDRAIHVLSCLGDKAKYASFDGSISRPQVLKARQGFKEQIRSLRSS 910
>11_06_0074 - 19821699-19823702
Length = 667
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 77 SIKCCRALELIGSRLGCVVRSGNPK 151
++K ALE + S CV+R GN K
Sbjct: 482 AVKTAEALEFLHSSAFCVIRHGNIK 506
>11_05_0015 +
18403367-18403729,18404500-18404565,18405121-18405234,
18406109-18406297,18406335-18406667,18406708-18406743,
18407806-18407919,18408506-18408999,18409293-18409716
Length = 710
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Frame = +1
Query: 94 CAGADRLQTGMRGAFGKPQG---TVARVRIG 177
C+GA + + RG G+P+G V+R+R G
Sbjct: 52 CSGATKPECYARGVMGQPRGRLPAVSRIRRG 82
>05_05_0146 - 22709115-22709388,22709491-22709705,22709808-22709900
Length = 193
Score = 25.4 bits (53), Expect = 8.0
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 182 GCPIRTRATVPWGFPNAPRIPVWSLSAPA 96
G PIR R V FP P + + +LSA A
Sbjct: 35 GTPIRGRGVVVCKFPADPTVALGALSAVA 63
>05_04_0285 -
19825106-19826988,19828479-19828529,19830013-19830361
Length = 760
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +3
Query: 30 SVPHPDETTPLPCHPR 77
SVP PLPCHPR
Sbjct: 51 SVPVAPVMPPLPCHPR 66
>03_05_0010 +
19622430-19622512,19622539-19623082,19623361-19623767,
19623831-19624167,19624290-19624508,19625522-19625826,
19626128-19626287,19626422-19626547
Length = 726
Score = 25.4 bits (53), Expect = 8.0
Identities = 13/56 (23%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +1
Query: 76 VNKMLSCAG--ADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEAL 237
+ KM+S G +RLQT +RG + + ++ + + D+W +++A+
Sbjct: 101 IEKMVSNMGWSEERLQTRLRGMHTVKETELLATKLNLLMKHLDDHDKWPQGIVKAM 156
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,857,893
Number of Sequences: 37544
Number of extensions: 186795
Number of successful extensions: 542
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 327448548
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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