Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_F17
         (298 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            22   1.8  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    20   7.4  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          19   9.8  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      19   9.8  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    19   9.8  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    19   9.8  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    19   9.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    19   9.8  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    19   9.8  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             19   9.8  

>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 21.8 bits (44), Expect = 1.8
 Identities = 5/18 (27%), Positives = 12/18 (66%)
 Frame = +3

Query: 147 PRHSSACAYWTAHYVCTL 200
           P+  +   YW+ +++CT+
Sbjct: 31  PKDHNGSIYWSMYHLCTV 48


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 19.8 bits (39), Expect = 7.4
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -3

Query: 206 SLERTDIMGCPIRTRATVPWG 144
           SLER D  GC       +P G
Sbjct: 572 SLERFDFCGCGWPQHMLIPKG 592


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 19.4 bits (38), Expect = 9.8
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 150 LGFPERTTHPSLEP 109
           LGFPER   P  +P
Sbjct: 600 LGFPERLILPRGKP 613


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 19.4 bits (38), Expect = 9.8
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 150 LGFPERTTHPSLEP 109
           LGFPER   P  +P
Sbjct: 600 LGFPERLILPRGKP 613


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 19.4 bits (38), Expect = 9.8
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +1

Query: 142 KPQGTVARVRIGQPIMSVRSSDRWKAQ 222
           KP+   ARV +G   +   S+   K+Q
Sbjct: 269 KPEAAPARVTLGVTSLLTLSTQHAKSQ 295


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 19.4 bits (38), Expect = 9.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 122 GCVVRSGNPKAQ*RVCV 172
           GCV R G  + + +VCV
Sbjct: 70  GCVCRLGYLRNKKKVCV 86


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 19.4 bits (38), Expect = 9.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 122 GCVVRSGNPKAQ*RVCV 172
           GCV R G  + + +VCV
Sbjct: 70  GCVCRLGYLRNKKKVCV 86


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 19.4 bits (38), Expect = 9.8
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 145 VSRTHHASQSGAYQLQRTTTF 83
           +SR  + S+S  Y  +R +TF
Sbjct: 34  ISRNSNRSESSGYCGRRPSTF 54


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 19.4 bits (38), Expect = 9.8
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = +1

Query: 178 QPIMSVRSSDRWKAQVI 228
           +PI++ R SDR + +++
Sbjct: 275 EPILTERPSDRQRNEIL 291


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 19.4 bits (38), Expect = 9.8
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 145 VSRTHHASQSGAYQLQRTTTF 83
           +SR  + S+S  Y  +R +TF
Sbjct: 34  ISRNSNRSESSGYCGRRPSTF 54


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,296
Number of Sequences: 438
Number of extensions: 1472
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6119169
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)