Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_F16
(243 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0706 - 6235817-6235988,6236028-6236338,6236421-6236627,623... 27 1.6
05_07_0274 - 28873531-28873644,28873727-28873981,28874111-288741... 27 2.1
09_04_0087 + 14476539-14476675,14478876-14479635,14479720-144798... 27 2.8
08_02_1088 + 24247781-24249043 27 2.8
05_04_0280 - 19752112-19752451,19754104-19755587 27 2.8
02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,881... 27 2.8
12_01_1103 + 11624736-11624997,11625308-11625400,11625559-11625593 26 3.7
04_04_1477 + 33873976-33874080,33874433-33874544,33874777-338748... 26 3.7
02_03_0180 - 16031366-16031445,16031950-16032022,16032148-160321... 26 3.7
07_03_0316 + 16684100-16684339,16684425-16685132,16685241-166859... 26 4.9
05_06_0212 + 26410330-26410419,26410562-26410846,26411005-264112... 26 4.9
07_03_1643 + 28329090-28329125,28329260-28329335,28329413-28330305 25 6.4
07_03_1305 - 25638531-25638584,25638909-25638990,25639087-256391... 25 6.4
06_01_0783 + 5857950-5857979,5859474-5860424 25 6.4
04_03_0676 + 18574651-18575283 25 6.4
04_04_1293 - 32418156-32418584,32420155-32420270,32421798-32421864 25 8.5
04_03_0930 - 20891334-20891511,20891958-20892109,20892737-208931... 25 8.5
>08_01_0706 -
6235817-6235988,6236028-6236338,6236421-6236627,
6236718-6236889,6236994-6237249,6238015-6238073,
6238693-6238782,6238869-6239013,6239598-6239712,
6240690-6240701
Length = 512
Score = 27.5 bits (58), Expect = 1.6
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +2
Query: 11 TLFCVVRNTCCNFTSL 58
++FCV N CCNFT++
Sbjct: 186 SIFCVDPNGCCNFTTV 201
>05_07_0274 -
28873531-28873644,28873727-28873981,28874111-28874179,
28874277-28874415,28874511-28875076,28875225-28875326,
28875425-28875491,28875576-28876072,28876148-28876212,
28876470-28876567,28876652-28876694,28876870-28876963,
28877325-28877360,28877454-28877542,28877667-28877788,
28878193-28878404
Length = 855
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 114 KQDAAPEEVTSTEVKDSPIKKSPTKKTEVPESNGKENGTEE 236
+ + A E+ + E +SP K + +E PES KE +E
Sbjct: 736 RANEAKEKAATAENSESPESKKEKENSENPESKEKEKERKE 776
>09_04_0087 +
14476539-14476675,14478876-14479635,14479720-14479871,
14479958-14480024,14480632-14480831,14480915-14481068,
14481585-14481669,14481766-14481857,14482575-14482766,
14482867-14482992,14483072-14483125,14483494-14483550,
14484509-14484606,14484703-14485038,14485116-14485203,
14486891-14487016,14487082-14487138,14488054-14488133,
14488228-14488270,14488948-14489034,14489331-14489420,
14489996-14490054,14490141-14490231,14490330-14490495,
14490662-14490755,14491787-14492909
Length = 1537
Score = 26.6 bits (56), Expect = 2.8
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = +3
Query: 111 EKQDAAPEEVTSTEVKDSPIKKSPTKKTEVPESNGKENGTE 233
EK+D EE E K +K K+ E E NG E E
Sbjct: 252 EKEDENEEEKLEEEEKKDKEEKLEEKEKENEEENGNEKDKE 292
>08_02_1088 + 24247781-24249043
Length = 420
Score = 26.6 bits (56), Expect = 2.8
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +3
Query: 81 SIIIMADAA-VEKQDAAPEEVTSTEVKDSPIKKSPTKKTEVPESNGKENGTEEVA 242
S++ AD A V K+ A + K+SP + + +S + GTE A
Sbjct: 252 SVVAKADTATVTKKSTAGKTGKKVAAKESPASHKTSMEAATKKSTANKTGTETAA 306
>05_04_0280 - 19752112-19752451,19754104-19755587
Length = 607
Score = 26.6 bits (56), Expect = 2.8
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -1
Query: 231 LCRSLYHCSQVL 196
LCRSLYHC V+
Sbjct: 421 LCRSLYHCKMVM 432
>02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,
8812361-8812492,8812681-8812864,8813002-8813135,
8813552-8813656,8813738-8813839,8813930-8814022,
8814136-8814456,8814595-8814696,8814791-8814853,
8815213-8815708,8815964-8816124,8816213-8816743,
8817077-8817118,8817203-8817334,8817639-8817703,
8817858-8818169,8818262-8818334,8818425-8818517,
8819440-8819501,8819740-8819809
Length = 1777
Score = 26.6 bits (56), Expect = 2.8
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = +3
Query: 129 PEEVTSTEVKDSPIKKSPTKKTEVPESNGKENGT 230
P EV E + SP KS E S KENGT
Sbjct: 1165 PSEVVDDEDQRSPPPKSDHSLIEKESSEVKENGT 1198
>12_01_1103 + 11624736-11624997,11625308-11625400,11625559-11625593
Length = 129
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +1
Query: 151 KSRILQLRNLPPKKLKY 201
K R + R+LPPKK+KY
Sbjct: 5 KERAAESRSLPPKKVKY 21
>04_04_1477 +
33873976-33874080,33874433-33874544,33874777-33874874,
33875548-33876261,33876348-33876518,33876955-33877011,
33877096-33878718
Length = 959
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 99 DAAVEKQDAAPEEVTSTEVKDSPIKKSPTKKTEVPESNGKENGTE 233
D ++EK P E ++ ++ + I++ + TEVP E TE
Sbjct: 234 DESIEKPADEPIEKSADQITERSIEQPAERVTEVPIQEPTERVTE 278
>02_03_0180 - 16031366-16031445,16031950-16032022,16032148-16032186,
16032434-16032715,16032790-16032948,16033034-16033390,
16033482-16033622,16033919-16034045,16034121-16034263,
16034740-16034917,16035019-16035552,16035628-16035812,
16036551-16036637,16036710-16036850,16036896-16037175,
16037944-16038020,16038326-16039138,16039292-16039801,
16039926-16040056,16040192-16040246,16040364-16040564,
16040640-16040909,16041103-16041184,16041271-16041434,
16041532-16041690,16041762-16042083,16042158-16042544,
16042811-16042999,16043233-16043317,16043458-16043753,
16043862-16043965,16044484-16044513,16044602-16044817,
16044923-16045540,16045718-16045993,16046619-16046762,
16046854-16046962,16047291-16047475,16047557-16047670,
16048348-16048479,16048929-16049249,16049424-16049891,
16054482-16054547,16054691-16054828,16054917-16055015,
16057098-16057194,16057661-16057761,16057858-16058085,
16059175-16059381,16059451-16059571,16059921-16059988,
16060148-16060213,16060396-16060509,16060949-16061300,
16063571-16063663,16063764-16063922,16064224-16064287,
16064385-16064577,16064673-16064710,16065510-16065645,
16065726-16065914,16065994-16066095,16067660-16067777,
16067861-16067964,16070338-16070346,16071428-16071475,
16071581-16071676,16072430-16072533,16073964-16074045,
16076573-16076601,16076708-16076963
Length = 4246
Score = 26.2 bits (55), Expect = 3.7
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = -3
Query: 208 LSGTSVFLVGDFLIGESLTSVEVTSSGAASCFSTAASAIIIIEFHKE 68
++ V V +G SL S+ V S G + +++ +IIE+H E
Sbjct: 1027 MASRQVIEVPSTSVGGSLYSIAVCSRGVDMQKALESTSTLIIEYHNE 1073
>07_03_0316 +
16684100-16684339,16684425-16685132,16685241-16685939,
16685992-16686053,16686096-16686368,16686622-16686873,
16686954-16687064,16687152-16687212,16687312-16687404,
16687482-16687667
Length = 894
Score = 25.8 bits (54), Expect = 4.9
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Frame = +3
Query: 93 MADAAVEKQDAAPE---EVTSTEVKDSPIKKSPTKKTEVPESNGKENGTEEVA 242
M D A +D P E + K P KK P+K E P + N +E A
Sbjct: 64 MGDCAEGDKDYIPPKEGETAPRQSKRQPKKKVPSKDDEAPTNTTGSNKSERSA 116
>05_06_0212 +
26410330-26410419,26410562-26410846,26411005-26411208,
26411636-26411692,26411859-26412926
Length = 567
Score = 25.8 bits (54), Expect = 4.9
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 111 EKQDAAPEEVTSTE-VKDSPIKKSPTKKTEVPESNGKEN 224
+ + + EE STE +K S + S + KTE PE NG +N
Sbjct: 446 DMEQRSKEEPLSTESLKSSKRRSSFSTKTEYPE-NGSKN 483
>07_03_1643 + 28329090-28329125,28329260-28329335,28329413-28330305
Length = 334
Score = 25.4 bits (53), Expect = 6.4
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +3
Query: 99 DAAVEKQDAAPEEVTSTEVKDSPIKKSPTKKTEVPESNGKENGTEE 236
+A E + PE+ E K + K+ EVPE KE G+ E
Sbjct: 122 EAGTESSEKKPEKEKKAEAKKPAKDDAAKKEGEVPE---KEKGSPE 164
>07_03_1305 -
25638531-25638584,25638909-25638990,25639087-25639169,
25639252-25639515,25639984-25640060,25640183-25640277,
25640953-25641065
Length = 255
Score = 25.4 bits (53), Expect = 6.4
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +3
Query: 93 MADAAVEKQDAAPE-EVTSTEVKDSPIKKSPTKKTEVPESNGKENGTEE 236
+A+ EK P + T++ V+D T +E PE G TEE
Sbjct: 119 VAEVVPEKDAETPAAQDTTSVVEDKSETPEMTASSEKPEEEGSNAATEE 167
>06_01_0783 + 5857950-5857979,5859474-5860424
Length = 326
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 159 DSPIKKSPTKKTEVPESNGKENGTEEVA 242
DSP+KK+ + T P GK NG + A
Sbjct: 248 DSPVKKASARPTTTP---GKANGKADTA 272
>04_03_0676 + 18574651-18575283
Length = 210
Score = 25.4 bits (53), Expect = 6.4
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +3
Query: 156 KDSPIKKSPTKKTEVPESNGKENGTEE 236
K+ +K+P +T++ + G+E G EE
Sbjct: 106 KNPEARKNPPYQTKITRATGREGGREE 132
>04_04_1293 - 32418156-32418584,32420155-32420270,32421798-32421864
Length = 203
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 132 EEVTSTEVKDSPIKKSPTKKTEVPESNGKENGTE 233
E+V+ E D+P KK PE NG+E+ E
Sbjct: 106 EDVSEGEGYDNPKGIDNNKKRGEPEENGEEDEEE 139
>04_03_0930 -
20891334-20891511,20891958-20892109,20892737-20893169,
20893592-20893708,20894099-20894196
Length = 325
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 166 GESLTSVEVTSSGAASCFSTAASAIIIIEFH 74
G SLT + +SS ++S S ASA +I H
Sbjct: 104 GPSLTKLSSSSSSSSSSSSPMASAAVIAAGH 134
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,709,924
Number of Sequences: 37544
Number of extensions: 82129
Number of successful extensions: 324
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 14,793,348
effective HSP length: 59
effective length of database: 12,578,252
effective search space used: 264143292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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