Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_F16
         (243 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA topoi...    22   2.7  
AY183376-1|AAO24766.1|  128|Anopheles gambiae cytochrome b5 prot...    22   3.6  
U03849-1|AAA53488.1|  388|Anopheles gambiae putative nucleic aci...    21   4.7  
CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           21   6.2  
M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    21   8.2  

>AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA
           topoisomerase protein.
          Length = 1039

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = -3

Query: 241 ATSSVPFSLPLLSGTSVFLVGDFLIGESLTSVEVTSSGAASCFSTAASAIIIIEFHKE 68
           +TSSV  S   +        GDF    S T  +++ S +A+  +T +  I + E  ++
Sbjct: 643 STSSVELSEESMDSDGGGASGDFHCLPSATGRDISPSASAAGLTTRSPPIELHELQQQ 700


>AY183376-1|AAO24766.1|  128|Anopheles gambiae cytochrome b5
           protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +3

Query: 135 EVTSTEVKDSPIKKSPTKKTEVPESN 212
           E+   E K  P+KK P  K +  + N
Sbjct: 78  ELIEAERKQIPVKKEPDWKMDQQDDN 103


>U03849-1|AAA53488.1|  388|Anopheles gambiae putative nucleic acid
           binding protein protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +3

Query: 105 AVEKQDAAPEEVTSTEVKDSPIKKSP 182
           AV+     P E+  T+   SP++ +P
Sbjct: 176 AVQPAPTQPHELVGTDPLSSPLQAAP 201


>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
 Frame = +3

Query: 99   DAAVEKQDAAPEEVTSTEVKDSP---IKKSPTKKTEVPESNGKENGTEE 236
            +A+     A    +    V+ SP      +P K T    +NG E  T E
Sbjct: 923  EASTPSTSAMAATIVPNPVQASPSPATAPAPAKTTSTDSTNGLETPTSE 971


>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 975

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 169 LRNLPPKKLKYLR 207
           LRNL   ++KYLR
Sbjct: 340 LRNLKKDRMKYLR 352


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,277
Number of Sequences: 2352
Number of extensions: 3066
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 563,979
effective HSP length: 53
effective length of database: 439,323
effective search space used: 11861721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)