Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_F16
         (243 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   0.94 
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   1.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   3.8  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    20   3.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   3.8  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    19   8.8  
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    19   8.8  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.2 bits (45), Expect = 0.94
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = -1

Query: 81  SFIKKIRNKEVKLQHVLRTT 22
           ++I K++NK+   +H+L+ T
Sbjct: 324 TYIPKVKNKKAGSKHLLQNT 343


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.4 bits (43), Expect = 1.6
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
 Frame = -2

Query: 212 IALRYFSFFGGRFLNWR---ILDFRGSHLFGCGV 120
           I+ +Y   F G FLN      +DF   +L  CGV
Sbjct: 115 ISEKYQEIFNGYFLNSESKDFIDFIQKNLQCCGV 148


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.2 bits (40), Expect = 3.8
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +3

Query: 12  HCFALC 29
           HCFALC
Sbjct: 742 HCFALC 747


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 20.2 bits (40), Expect = 3.8
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = -3

Query: 196 SVFLVGDFLIGESLTSVEVTSSGAASCFSTAASAII 89
           +  L  DF+    LT +        SC  +A S II
Sbjct: 95  AAILANDFMKNLELTQIRRDRGLHVSCSFSAGSTII 130


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.2 bits (40), Expect = 3.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 166 GESLTSVEVTSSGAASCFSTAASAIIIIE 80
           G S  + E TS+  A  F+TAAS+  ++E
Sbjct: 894 GCSSKNGEPTSAAFAQGFATAASSPGLLE 922


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 19.0 bits (37), Expect = 8.8
 Identities = 6/24 (25%), Positives = 15/24 (62%)
 Frame = +3

Query: 168 IKKSPTKKTEVPESNGKENGTEEV 239
           +  +P  K++  E+N +  G+E++
Sbjct: 276 VNTAPFMKSQFGENNVQYQGSEDI 299


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 19.0 bits (37), Expect = 8.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 111 EKQDAAPEEVTSTEVK 158
           EKQ     E +STE+K
Sbjct: 99  EKQTTIEREFSSTEMK 114


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,799
Number of Sequences: 438
Number of extensions: 784
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4149981
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)