Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_F15
(197 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1059 + 27273267-27273316,27274077-27274163,27274245-272743... 71 1e-13
03_02_0838 + 11641484-11642030,11643614-11643650,11643784-116438... 63 3e-11
11_03_0144 + 10724538-10724753,10726127-10726186 39 6e-04
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729... 38 0.001
08_02_0698 - 20151374-20151526,20153024-20153110,20153327-20153701 27 2.1
08_02_0831 + 21619891-21620724 27 2.8
01_06_1012 - 33806190-33807875,33807963-33808331 27 2.8
01_02_0111 - 11220179-11220322,11220430-11220497,11220611-112206... 27 2.8
01_01_0530 - 3877337-3877396,3877709-3877837,3877954-3878221,387... 26 3.7
03_01_0575 + 4247431-4247489,4248475-4248547,4248792-4249229,425... 26 4.8
01_01_0027 - 205450-206029,206706-207276,207408-207836,208438-20... 26 4.8
06_02_0289 + 13825103-13825510,13825651-13826112,13826189-138270... 25 6.4
12_02_1081 + 25914180-25914371,25918121-25919104 25 8.5
07_03_0302 + 16459742-16459795,16459894-16460067,16460160-164602... 25 8.5
05_01_0252 - 1914060-1914142,1914243-1914345,1914516-1914599,191... 25 8.5
04_03_0847 - 20254736-20254933,20256127-20256201,20257538-202577... 25 8.5
>06_03_1059 +
27273267-27273316,27274077-27274163,27274245-27274392,
27274615-27274732,27274798-27274859
Length = 154
Score = 70.9 bits (166), Expect = 1e-13
Identities = 30/50 (60%), Positives = 39/50 (78%)
Frame = +1
Query: 22 AKSAAPGGDTIFGKILRKEIPAKFVYEDDQCVAFHDVNPQAPTHILVIPR 171
A +A GG TIF KI+ KEIP+ VYED++ +AF D+NPQAP H+LVIP+
Sbjct: 36 AATADTGGPTIFDKIIAKEIPSNVVYEDEKVLAFRDINPQAPVHVLVIPK 85
>03_02_0838 +
11641484-11642030,11643614-11643650,11643784-11643841,
11646176-11646265,11646796-11646913,11648093-11648277,
11648330-11648455,11648578-11648634,11648741-11648821,
11649068-11649102,11649265-11649354,11649443-11649599,
11649785-11649901
Length = 565
Score = 62.9 bits (146), Expect = 3e-11
Identities = 23/43 (53%), Positives = 36/43 (83%)
Frame = +1
Query: 43 GDTIFGKILRKEIPAKFVYEDDQCVAFHDVNPQAPTHILVIPR 171
G +F KI++KEIP+ V++D++ +AF D+NPQAPTHI++IP+
Sbjct: 192 GSQVFDKIIKKEIPSTVVFDDEKVLAFRDINPQAPTHIVIIPK 234
>11_03_0144 + 10724538-10724753,10726127-10726186
Length = 91
Score = 38.7 bits (86), Expect = 6e-04
Identities = 18/38 (47%), Positives = 23/38 (60%)
Frame = +1
Query: 34 APGGDTIFGKILRKEIPAKFVYEDDQCVAFHDVNPQAP 147
A G +F +I+R E PA VYEDD C+ D +P AP
Sbjct: 53 AEGKSCVFCRIIRGEAPAFKVYEDDVCLCILDSHPLAP 90
>12_01_0796 +
7292523-7292783,7292963-7293018,7295274-7295331,
7295777-7295843,7296461-7296516,7296638-7296691,
7296836-7296961
Length = 225
Score = 37.9 bits (84), Expect = 0.001
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +1
Query: 40 GGDTIFGKILRKEIPAKFVYEDDQCVAFHDVNPQAPTHILVIPRKPISQL 189
G +F +I++ PA +YEDD C+ D P + H L+IP++ L
Sbjct: 70 GQRCVFCEIVKGNKPAYKLYEDDVCLCILDTKPLSTGHSLIIPKRHFPSL 119
>08_02_0698 - 20151374-20151526,20153024-20153110,20153327-20153701
Length = 204
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 141 LWVHIMKSYTLIIFIDEFCRYFFA*YFPKYSI 46
L +H + +YTLII C FF+ + PK ++
Sbjct: 148 LSLHRLPAYTLIIECTNICMCFFSGFNPKENV 179
>08_02_0831 + 21619891-21620724
Length = 277
Score = 26.6 bits (56), Expect = 2.8
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -3
Query: 147 WCLWVHIMKSYTLIIFIDEFCRYFFA 70
W LWV+++ + LI+ + F + FA
Sbjct: 72 WLLWVYLLAMFALIVALLGFTAFAFA 97
>01_06_1012 - 33806190-33807875,33807963-33808331
Length = 684
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -3
Query: 168 GYHKDMGWCLWVHIMKSYTLIIFIDEFCRYF 76
GY+K++GW + V +S L + C Y+
Sbjct: 476 GYYKELGWSVEVEFDESILLWHIATDLCFYY 506
>01_02_0111 -
11220179-11220322,11220430-11220497,11220611-11220644,
11220735-11220766,11220900-11220959,11221276-11221729
Length = 263
Score = 26.6 bits (56), Expect = 2.8
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +1
Query: 127 DVNPQAPTHILVIPR 171
D +P+APTH+ ++PR
Sbjct: 35 DTSPRAPTHVALLPR 49
>01_01_0530 -
3877337-3877396,3877709-3877837,3877954-3878221,
3878385-3878776,3879003-3879119,3879209-3879304,
3879775-3879948,3880077-3880243,3880800-3880965,
3881040-3881178,3881767-3881901,3882157-3882161
Length = 615
Score = 26.2 bits (55), Expect = 3.7
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = -3
Query: 180 NWLPGYHKDMGWCLWVHIM 124
+WL G+H C+W IM
Sbjct: 37 DWLEGFHSGFRVCIWTAIM 55
>03_01_0575 +
4247431-4247489,4248475-4248547,4248792-4249229,
4252122-4253339
Length = 595
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Frame = -1
Query: 89 FAGISLRNIFPNIVS---PPGAADFASSTSP 6
FAG+ R++FP+ S PP A AS+ +P
Sbjct: 449 FAGVLFRHLFPSKTSAPPPPSADGDASAAAP 479
>01_01_0027 -
205450-206029,206706-207276,207408-207836,208438-208525
Length = 555
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = -2
Query: 187 AVKLASWVSQGYGLVLVGSHHEKLHIDHLHRRILQVFLCV 68
A A S +GL+ + +H ++ + DH H+ V + V
Sbjct: 153 AALTAKRCSDSHGLICMINHEDRCYHDHCHKEYFIVLVVV 192
>06_02_0289 +
13825103-13825510,13825651-13826112,13826189-13827021,
13827104-13827274,13828025-13828076
Length = 641
Score = 25.4 bits (53), Expect = 6.4
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = -3
Query: 144 CLWVHIMKSYTLIIFIDEFCRY 79
CLW H K Y + E CR+
Sbjct: 608 CLWAHQDKEYIMCAHNQESCRF 629
>12_02_1081 + 25914180-25914371,25918121-25919104
Length = 391
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -2
Query: 136 GSHHEKLHIDHLHRRILQVFL 74
GSH + H++ HRR L + L
Sbjct: 187 GSHRQPFHVEAGHRRALNMLL 207
>07_03_0302 +
16459742-16459795,16459894-16460067,16460160-16460233,
16460593-16460626,16460772-16460830,16461039-16461153,
16461251-16461288,16461374-16461471,16461590-16461645,
16461957-16462239,16462532-16462647,16463278-16463334,
16463686-16463751,16464020-16464094,16464286-16464324
Length = 445
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 178 LASWVSQGYGLVLVGSHHEKLHIDHLHRRILQVF 77
L S+ SQG +V + ++ +D LH +LQVF
Sbjct: 402 LCSFESQGLTVVDISANSFPQTLDWLHSYLLQVF 435
>05_01_0252 -
1914060-1914142,1914243-1914345,1914516-1914599,
1914687-1914782,1914859-1914909,1915001-1915141,
1915221-1915277,1915396-1915470,1915556-1915828,
1915935-1915994,1916109-1916201,1916281-1916400
Length = 411
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -2
Query: 49 YRHREQQILRVLPHPS 2
Y++RE Q +RVL HP+
Sbjct: 112 YKNRELQTMRVLDHPN 127
>04_03_0847 -
20254736-20254933,20256127-20256201,20257538-20257717,
20257802-20257869,20258563-20259125,20259198-20259235
Length = 373
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 157 GYGLVLVGSHHEKLHIDHL 101
G ++V HH KLHID L
Sbjct: 312 GKQTIVVSGHHGKLHIDGL 330
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,987,734
Number of Sequences: 37544
Number of extensions: 102644
Number of successful extensions: 288
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of database: 14,793,348
effective HSP length: 45
effective length of database: 13,103,868
effective search space used: 262077360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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